Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01150 ATGCCTGCGTCGTTGCAGAGAACGAGCTCCGGTGAGTTTCCGGCTGGGTTAAGGGTTCTTGTTGTTGATGATGACGTCACTACGTTGAAGATAATTGAACAAATGTCTCTTCGCTGTCATTATCAAGTCACTACATGCTCTGAGGCTACTGTTGCTTTGAAAATTCTGCGGGAAAGGAAAGGCTGTTTTGATGTTGTGCTGAGTGATGTTCATATGCCAGATATGGATGGCTATAAACTCCTTGAACATGTTGGGTTGGAAATGGACCTTCCTGTTATTATGATGTCTGTTGATGATAGAACAAGTACTGTCATGAAGGGAATTAGACACGGGGCTTGTGATTATTTTATTAAGCCTGTACGGTTGGAAGAACTAAGGAATATATGGCAGCATGTTGCTAGGAAAATTTTGAATGAAAATAAGGAACATGATAATTCTGGCAGCATAGAAGATAATGATTGCAATACACGTGGGAATGATGATAATGACAACACTTCTTCTGTTGCTGGTGCAACAAAAGGAATAGTAAAAGAGCATAAAAAGAGGAGCAATTTAAAAGATGAAGATGTTGAATTGGAGAGTGATGATCCATCTACATCTAAGAAGCCTCGTGTAGTGTGGTCAGTAGAACTGCATCAACAATTTGTCAGTGCTGTGAATCAACTAGGACTTGACAAGGCCGTGCCAAAGAGAATACTTGAAATGATGAATGTCCCTGGTCTGACAAGAGAAAATGTTGCAAGTCATTTACAGAAATTTAGACTTTATTTGAAGAGGTTAAGTGTGGTGGCGCATCAACAGAATGGGATGCTAAACACAGTTCATGGGACTATAGAATCCAAGCTGGCTGCTACTGGAAGATATGACATACAGGCTTTGGCTGGTTCTGGCCATGTTTCCCCTGAAACACTTGCAGCTCTTCAGGCTGAGCTCTTAGGTCACCCGGCAACTAACATAATGCCTACAGTGGACCGGACTGCACTAATGCATGCATCTATACAGGGGCCAAAACATTCTCGTGCTGATGACCATGCTGTAGCATATAGTCAGCCTCTTGTAAAATATCCTTCCAGCATTGTCAATAATTTCCCTCAGTCGATCTTAAAAGTAGATGATTCATCGTCAATATATGGAGCATGGCCGCCATCTAGTACACTCGGGTCAGTCTCAAGTGGAAGGTTAGGCATTCAGAATAATAACACGCTGGTTGATATATTGCAGCACCAACAACGGCACCAGCATCAGCAAAAACAACAGCAGTCTCAGATACATGATCAAAATCGATCAATCAATGTTCAACCATCTTGCTTGGTGGTTCCTGCTCAATCTTCTAATACCTTCCAGGCAGAAAATAGTGTTGCTTCTGTCAACAAGGATTGCAGTTTTAGCCGAAATGCCATTATTGATTATAGTCAATCATCACAAAAATCAAATAATTCATTGAGTTCATCTCAATATCTTGGCGGAGACACTAGAGCTACCTCCATTTCTCCTCAAATATCCTCTTTTTCAGTAGGATCCAGAAATAACAATATTCAGCTGATTCAAAATTCAACTTTAACATTTGGTGCTGCCAGACCTTTGCCTAGCCTTCTCCCGTTGACACTTAGACAAGTTCCATATGATATTAAATCCAGCGATTCACTTGAGGAAGTATGTCTTAGGAATCTTGGATTTGTTGGAAAAAGTACCTGCATACCAAGTTTTGAAAATAAAATTCAATCATCTGCAAATGATTTTAGTCAAATGAAAGTATTCATGGCTAGCAATGGTAATACAGTGAAGGAGGAACCAAAGGAGGGACCAAGTCTTATCAGATATCCAAATGCGAGCCACCCAGTTATACAGAATTATCCATCTCATGATCATTCAAGTGCATTCACTTAA 1887 0.4043 MPASLQRTSSGEFPAGLRVLVVDDDVTTLKIIEQMSLRCHYQVTTCSEATVALKILRERKGCFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSVDDRTSTVMKGIRHGACDYFIKPVRLEELRNIWQHVARKILNENKEHDNSGSIEDNDCNTRGNDDNDNTSSVAGATKGIVKEHKKRSNLKDEDVELESDDPSTSKKPRVVWSVELHQQFVSAVNQLGLDKAVPKRILEMMNVPGLTRENVASHLQKFRLYLKRLSVVAHQQNGMLNTVHGTIESKLAATGRYDIQALAGSGHVSPETLAALQAELLGHPATNIMPTVDRTALMHASIQGPKHSRADDHAVAYSQPLVKYPSSIVNNFPQSILKVDDSSSIYGAWPPSSTLGSVSSGRLGIQNNNTLVDILQHQQRHQHQQKQQQSQIHDQNRSINVQPSCLVVPAQSSNTFQAENSVASVNKDCSFSRNAIIDYSQSSQKSNNSLSSSQYLGGDTRATSISPQISSFSVGSRNNNIQLIQNSTLTFGAARPLPSLLPLTLRQVPYDIKSSDSLEEVCLRNLGFVGKSTCIPSFENKIQSSANDFSQMKVFMASNGNTVKEEPKEGPSLIRYPNASHPVIQNYPSHDHSSAFT 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01150 628 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 199 258 IPR017930 -
Mepo4g01150 628 MobiDBLite consensus disorder prediction 142 158 - -
Mepo4g01150 628 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Mepo4g01150 628 MobiDBLite consensus disorder prediction 174 200 - -
Mepo4g01150 628 SUPERFAMILY Homeodomain-like 199 259 IPR009057 -
Mepo4g01150 628 MobiDBLite consensus disorder prediction 613 628 - -
Mepo4g01150 628 MobiDBLite consensus disorder prediction 142 201 - -
Mepo4g01150 628 FunFam Two-component response regulator 17 154 - -
Mepo4g01150 628 CDD REC_typeB_ARR-like 19 133 - -
Mepo4g01150 628 SMART REC_2 17 129 IPR001789 GO:0000160
Mepo4g01150 628 MobiDBLite consensus disorder prediction 593 628 - -
Mepo4g01150 628 SUPERFAMILY CheY-like 16 137 IPR011006 -
Mepo4g01150 628 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 416 IPR045279 GO:0009736
Mepo4g01150 628 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
Mepo4g01150 628 Gene3D - 200 261 - -
Mepo4g01150 628 FunFam Two-component response regulator 198 261 - -
Mepo4g01150 628 Pfam Myb-like DNA-binding domain 204 252 IPR001005 -
Mepo4g01150 628 Gene3D - 17 199 - -
Mepo4g01150 628 NCBIfam myb-like DNA-binding domain, SHAQKYF class 202 255 IPR006447 GO:0003677
Mepo4g01150 628 PIRSF RR_ARR_type-B 2 625 IPR017053 GO:0003677|GO:0003700|GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01150 Mepo-Chr4 14967965 14976011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01150 51 316 Response Regulator Gene Family AT3G16857 52.817 6.98e-89 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mepo4g01150 Response_reg 3e-20 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g01150 4 14967965 14976011 Mepo4g01150 4 14967965 14976011 ECH