Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01140 ATGTCAGCACGACAAATCATCGAAGTACCACAAACACCGCTTCTCCGCTCACACCATGAAGGCAACGGCGGCAGCCGCCGTACTTCCCTCGCTCAGCTTCTTGGACGCGCCACCGGACGGAGAGGACCATCCGTCCTTGTACGCGAAACGGCGGCGCGTGAACTCGAAGAGCGTCGTGCCGATTGGGGATACTCGAAGCCAGTTGTAGCGCTTGACATGTCGTGGAATATGGCGTTCGTTGTGGTATCGGCGGTGATGCTTGCGTTCACCGTTGACGAGCATCCGAACATGCCGATCCGCGTTTGGATCGTTGGATATGCGTTGCAGTGTTTTGTTCATGTTGTATTGGTGTGGATTGAGTATCACCGCCGTAATCGGAGGGATTCGCGGCGGAGACAGAGGGATAGTGATGCTGAATTCAGTTCCGACGGTAACGATAGTGATGACAGCGATGGTGACGTGAACTCGTCTCAGTCCAGATTCACCAAGCGATGTGAATCAATAAATACTGGGGTTTCATTCCTTTGGTGGATGGTAGGCTTTTACTGGGTTGTCTCTGGTGATGATATCCTTCTGCAAGACGCTCCACGCTTGTACTGGTTGGCTGTTATCTTTTTGGCATTTGATGTCTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGCTTGATTGGCATTGCTCTCTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCTGTTGCGGGACAGGAAGGTGCGTCAGAAGCAGATCTTAGTATACTTCCAAAATACAGATTTCGATTATCAAACAATGAGGAGAAGGATAATGGTGGAGCTGGATCAATGGTTCCCATAGAAACCACCAGTGCATACTTGGCAACTGAACGAATACTTTTACCTGAGGATGCGGAATGCTGTATATGCCTCTGTCCATATGAGGATGGAGTAGAGCTCCACACTCTTCCCTGCAACCATCATTTCCATTCTTCATGCATAGTAAAATGGCTAAAGATGAATGCAACTTGTCCTCTTTGTAAGTACAATATTCTCAAGGGAAACGAACAGGTATAA 1053 0.4824 MSARQIIEVPQTPLLRSHHEGNGGSRRTSLAQLLGRATGRRGPSVLVRETAARELEERRADWGYSKPVVALDMSWNMAFVVVSAVMLAFTVDEHPNMPIRVWIVGYALQCFVHVVLVWIEYHRRNRRDSRRRQRDSDAEFSSDGNDSDDSDGDVNSSQSRFTKRCESINTGVSFLWWMVGFYWVVSGDDILLQDAPRLYWLAVIFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFRLSNNEEKDNGGAGSMVPIETTSAYLATERILLPEDAECCICLCPYEDGVELHTLPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01140 350 Pfam Ring finger domain 298 340 IPR001841 -
Mepo4g01140 350 SUPERFAMILY RING/U-box 286 344 - -
Mepo4g01140 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 345 IPR013083 -
Mepo4g01140 350 MobiDBLite consensus disorder prediction 132 158 - -
Mepo4g01140 350 FunFam E3 ubiquitin protein ligase RIE1 279 347 - -
Mepo4g01140 350 MobiDBLite consensus disorder prediction 1 27 - -
Mepo4g01140 350 PANTHER TARGET OF ERK KINASE MPK-1 34 348 - -
Mepo4g01140 350 SMART ring_2 299 339 IPR001841 -
Mepo4g01140 350 CDD RING-H2_PA-TM-RING 298 340 - -
Mepo4g01140 350 ProSiteProfiles Zinc finger RING-type profile. 299 340 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01140 Mepo-Chr4 14897179 14902095 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01140 12 349 C3H Transcription Factor Family AT1G68070 68.328 1.51e-170 476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g01140 4 14897179 14902095 Mepo4g01140 4 14897179 14902095 ECH