Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g06257 ATGGATAATGGTTGCTTCTCTTCGCCTCGACGCGATTTTCCTGCTGGTTTACGTGTTCTTGTTGTGGATGATGATCCAACATGGCTTAAGATCCTTGAAAAGATGCTCAAGAAGTGTAATTATGAAGTGACCACATGTTGCTTAGCAAGACATGCTCTAAGCTTGCTCCGTGAAAGGAAAGACGGATACGATATAGTGATCAGCGATGTAAACATGCCCGACATGGACGGTTTCAAACTTCTTGAGCATGTTGGACTTGAGATGGATCTTCCTGTCATTATGATGTCTGTGGATGGAGAAACAAGCAGGGTGATGAAAGGTGTTCAACACGGTGCATGTGATTATCTCCTTAAGCCTATAAGGATGAAAGAGTTGCGAAATATATGGCAACATGTCTTCAGAAAACGGATACACGAGGTTAGAGAATTTGAAAATTTTGAGAGTTTTGAGAGCATGCACTTGATGAGAAATGGATCAGAGATGTCCGAGGACGGGAACCTGTTTGCTTTAGAAGATATGACCTCAACGAAGAAAAGAAAAGATGTAGATAACAAACATGATGACAAAGAATTTCTGGATTCATCTTCCTCAAAGAAAGCTAGAGTAGTTTGGTCTGTAGATCTTCATCAGAAGTTTGTTAAAGCAGTGAATCAGATTGGATTTGATAAAGTTGGTCCGAAGAAAATACTAGATTTGATGAATGTTCCATGGCTGAGTAGAGAGAATGTTGCTAGCCACTTACAGAAATACCGGCTTTACTTGAGTAGACTTCAGAAAGATAACGAACAAAAATCTTCCTCAAGTGGAATGAAGCATTCTGAACCTTCAAAAGATGTAGGAAATTTCGGTTTTCCGAACTCAGCAAACAAGCAACAAAACGATGCTTCAATCGACAAATACAACTATTCTGAAGGAAGCTTACAACATCAGAACATAGAAACTAAAAGTCATGAAGGTAATCCCAAAGGAATTGTTCCACATTCCACCGCTGCAGAAAAAGCAAGAGCTTTGACTGGTAACATCACTGATGCAACAGACATTGCACTTAATAAACCTTTTGCCACACTCGAATCAGAACGAAAACGTGGAGCGTTCGATTGCAACATGTCAACACCGTATTCTTGGACTGAAATTCCAAAAACACAGCTCAAAAAAGAACAAAAGTCACTTGTTCATCTTGAGGATAACTTCAACCTATTGCCTTTAAATGGTAAGCAGCATAACATTCAAGTTGATCAATCACAGTCAATTGCATCAATTAGTTCCACTCCCTCTATAACAGAGCAAGATGTCGCTGCTTGTATAGAAACAAAACCTAGGTTTTCTGATTACAAGAAAGACTACACTAGTTCGGTGAGTTCAATAAGAAGTTCAGTTGACACCTTTCCTTTCCAACCCGGAAGCCTTATGATGAATGATCAACCTACACAACCTATTTCCACTACTAATTTCAGCTTAAAAACTCAGCATTCTAATCTTAGTTGCATTTCTGATCTAGAGTCTTACCAAAGAAACCTACTTTTGGGAGGTGAAGCAGCTTCCATGCCTTTGGACGAGGACTTGTATTTCTATTGGCATAATATGAACTTTGGTCAACAGAATATAGGGATGTCTGAGTATTATGATCCAGGACTTCTCATAGAAGTTCCAAATCACTTATATGATTCAGCAGATTATTCAGTAATTGATCAAGGTCTATTCATAGCATGA 1710 0.3889 MDNGCFSSPRRDFPAGLRVLVVDDDPTWLKILEKMLKKCNYEVTTCCLARHALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVFRKRIHEVREFENFESFESMHLMRNGSEMSEDGNLFALEDMTSTKKRKDVDNKHDDKEFLDSSSSKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLSRENVASHLQKYRLYLSRLQKDNEQKSSSSGMKHSEPSKDVGNFGFPNSANKQQNDASIDKYNYSEGSLQHQNIETKSHEGNPKGIVPHSTAAEKARALTGNITDATDIALNKPFATLESERKRGAFDCNMSTPYSWTEIPKTQLKKEQKSLVHLEDNFNLLPLNGKQHNIQVDQSQSIASISSTPSITEQDVAACIETKPRFSDYKKDYTSSVSSIRSSVDTFPFQPGSLMMNDQPTQPISTTNFSLKTQHSNLSCISDLESYQRNLLLGGEAASMPLDEDLYFYWHNMNFGQQNIGMSEYYDPGLLIEVPNHLYDSADYSVIDQGLFIA 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g06257 569 NCBIfam myb-like DNA-binding domain, SHAQKYF class 199 252 IPR006447 GO:0003677
Mepo3g06257 569 FunFam Two-component response regulator 195 258 - -
Mepo3g06257 569 SUPERFAMILY CheY-like 16 144 IPR011006 -
Mepo3g06257 569 Gene3D - 17 197 - -
Mepo3g06257 569 CDD REC_typeB_ARR-like 19 133 - -
Mepo3g06257 569 SMART REC_2 17 129 IPR001789 GO:0000160
Mepo3g06257 569 SUPERFAMILY Homeodomain-like 197 256 IPR009057 -
Mepo3g06257 569 Gene3D - 198 258 - -
Mepo3g06257 569 MobiDBLite consensus disorder prediction 261 290 - -
Mepo3g06257 569 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 281 IPR045279 GO:0009736
Mepo3g06257 569 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160
Mepo3g06257 569 Pfam Myb-like DNA-binding domain 201 251 IPR001005 -
Mepo3g06257 569 FunFam Two-component response regulator 17 153 - -
Mepo3g06257 569 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g06257 Mepo-Chr3 76699526 76703263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g06257 13 265 Response Regulator Gene Family AT2G25180 56.641 5.29e-83 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Mepo3g06257 Response_reg 2.3e-24 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g06257 3 76699526 76703263 Mepo3g06257 3 76699526 76703263 ECH
Mepo3g06257 3 76699526 76703263 Mepo2g03829 2 47533438 47536484 PCT