Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05355 ATGGTTTTGTCATGGACTAAAAGAAACATGTTCCGCCGCACCGGCAAAGCTAAACACCAACTTCCCGGCGCCGGCGACGGCGAATTAACGGTGGAGGAGATAACAATCCCAACCCATTTCCGTTGTCCGGTAAGTCTAGACTTGATGAAAGATCCAGTAACTCTATCAACAGGAATCACCTACGACAGATTCAGCATCGAGAAATGGATTGAAGCTGGAAACAAAACTTGCCCAGTTACAAATCAAAAACTTTCAACCTTCGAAATCACACCAAATCATACAATTCGTAAAATGATTCAGAGTTGGTGTGTTGAGAATAGTTCTTATGGGATTGAGAGAATTCCAACACCTCGTATACCTGTTTCAGCGTACGAGGTTAATGAGGTTTGTACTAGGTTGTTGTCGGGTTGTAGAAATTTGGATGAGAAAAAGTGTGTTGAGTTTGTTGGAAAGATTAAGGTTTGGTGGAGAGAGAGTGAGAGGAATAAGAGGGTTATAATTGGAAATGGAGTTTCTTCTGATTTGGCTACGGTTTTTGATTCTTTTTCATGTGTTTCTTTTGAGGAACATGTTGTTGTTTTGGAAGAGATTTTGGAGATTTTAACATGGATTATTAAAACCCCTTTTGGTGATTCGAAGACGAAGATGTGTTTATCGTCGTCGTCTTTGAATTGTATGGTTTGGTTTTTAGATGGTAAAGATTTAGGTGCAAGACAAAATGCTGTTTTGTTGCTTAAAGAAATGAATGTTGAAGAGTTATCAAGAATTGAAGGTGTTGTTGAGGGTTTGGTTAAGATTGTTAAGGAACCAATTGGGTCAAGTGCTACAAAAGCATGTTTGACCACAATTTTCAAGTTGGTTTCATCGGCGAAAAATAGAGATGAAATTAGTGAGAAGTTTGTTGAATTGGGTTTGGTTTCATTTTTGCTTGAAACAATTGTTGATGGAGAAAAAGGGATATGTGAAAAGGCACTAGGTGTTTTGGATTGTTTATGTGATTGCAAGAAAGGGAAAGAGGTTGTTCAAACGAACGCTTTAGCTTTGCCTCTTGTGATTAAGAAGCTTTTGAGGGTATCTCCTTTGGCTTCTAGTTTTGCTGTTGGGATTGTTAGGAAGATACTTTGTGAGAACAAGGAAGAAAGGGTTTTGATTGAAGCAATTCAACTTGGAGCTTTTCAGAAACTCTTGGTTATGTTGCAAGTTGGGTGTGAAGAGAAAACAAAGGAGAATACTACTGAGTTGTTGAAATTGTTGAATGGTTATAGAAGCAAAGCTGAATGTGTTGACTCTTCATTAGATTTCAAGTATCTCAAGAACTAA 1320 0.3803 MVLSWTKRNMFRRTGKAKHQLPGAGDGELTVEEITIPTHFRCPVSLDLMKDPVTLSTGITYDRFSIEKWIEAGNKTCPVTNQKLSTFEITPNHTIRKMIQSWCVENSSYGIERIPTPRIPVSAYEVNEVCTRLLSGCRNLDEKKCVEFVGKIKVWWRESERNKRVIIGNGVSSDLATVFDSFSCVSFEEHVVVLEEILEILTWIIKTPFGDSKTKMCLSSSSLNCMVWFLDGKDLGARQNAVLLLKEMNVEELSRIEGVVEGLVKIVKEPIGSSATKACLTTIFKLVSSAKNRDEISEKFVELGLVSFLLETIVDGEKGICEKALGVLDCLCDCKKGKEVVQTNALALPLVIKKLLRVSPLASSFAVGIVRKILCENKEERVLIEAIQLGAFQKLLVMLQVGCEEKTKENTTELLKLLNGYRSKAECVDSSLDFKYLKN 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05355 439 Gene3D - 125 422 IPR011989 -
Mepo3g05355 439 SUPERFAMILY RING/U-box 28 112 - -
Mepo3g05355 439 SMART Ubox_2 39 102 IPR003613 GO:0004842|GO:0016567
Mepo3g05355 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 113 IPR013083 -
Mepo3g05355 439 PANTHER WDSAM1 PROTEIN 31 428 IPR045185 GO:0061630
Mepo3g05355 439 FunFam RING-type E3 ubiquitin transferase 30 112 - -
Mepo3g05355 439 CDD RING-Ubox_PUB 37 88 IPR045210 -
Mepo3g05355 439 SUPERFAMILY ARM repeat 182 405 IPR016024 -
Mepo3g05355 439 ProSiteProfiles U-box domain profile. 35 109 IPR003613 GO:0004842|GO:0016567
Mepo3g05355 439 Pfam U-box domain 36 107 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05355 Mepo-Chr3 67028466 67030078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05355 33 438 U-box Gene Family AT5G37490 46.005 8.01e-113 337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05355 3 67028466 67030078 Mepo3g05355 3 67028466 67030078 ECH
Mepo3g05355 3 67028466 67030078 Mepo7g02074 7 31071210 31073007 PCT