Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo3g05354 ATGAAACCAATTTTTGATCTTGAAGTAGAGGCCATAGAAGAATATGAATCTGATGTTAGTAGCCATGTTGCTTCTACTATATCCACCCACCAAATTGAAACCTCTCCTGGTTCCTATAGTAACAGCCTTTCTAATTCAGATTCCATCTCACTGGACTTAACACTCAATTTCAACAACAATGACTTGGTTGCTAGAGATTCAACAGGATTCTCATTCTCAAGCACCAGTGAGAGTAGCAATGAACCTATCATCCAAAGAATTTTCTCTTGCAATTACTGTCGGCGCAAATTTTATAGCTCGCAGGCACTTGGTGGCCACCAAAACGCGCACAAGAGAGAAAGAACATTAGCAAAGCGAGCTATGCGAATTGGACTATTCACCGAGAGGTATGCAAGTCTTGCATCTCTGCCTCTCAATGGTTCTTTCAGGTCATTAGGTATAAAGACACACTCTTCACTACACCATGGTTTTTTGCCTCCAACAATAAGGCCTAGCCCTGAGATAAAAAGCAGTGCTAGATTCAAGCTAGGATCTATCGGTCATCCGATATTCTTGGAGGACGATGAGACAGAACTGATGTGGCAAGGTAGTTTCCATCAGGTTACTGAGGGAGGTAGTAATATTTATCAGAGTTCAAATATGTGTTTTACTGAGGTGAATGTGAAACCATTGGTTGACATAGAGAATTCAGCACCTGAATTAACACTGAAACTTTGA 717 0.4086 MKPIFDLEVEAIEEYESDVSSHVASTISTHQIETSPGSYSNSLSNSDSISLDLTLNFNNNDLVARDSTGFSFSSTSESSNEPIIQRIFSCNYCRRKFYSSQALGGHQNAHKRERTLAKRAMRIGLFTERYASLASLPLNGSFRSLGIKTHSSLHHGFLPPTIRPSPEIKSSARFKLGSIGHPIFLEDDETELMWQGSFHQVTEGGSNIYQSSNMCFTEVNVKPLVDIENSAPELTLKL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo3g05354 238 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Mepo3g05354 238 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 41 165 IPR044246 GO:0009788
Mepo3g05354 238 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Mepo3g05354 238 FunFam Zinc finger protein 2 66 134 - -
Mepo3g05354 238 Gene3D Classic Zinc Finger 66 132 - -
Mepo3g05354 238 SUPERFAMILY beta-beta-alpha zinc fingers 86 115 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo3g05354 Mepo-Chr3 67010920 67013545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo3g05354 83 238 C2H2 Transcription Factor Family AT1G66140 48.925 3.47e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo3g05354 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo3g05354 3 67010920 67013545 Mepo3g05354 3 67010920 67013545 ECH
Mepo3g05354 3 67010920 67013545 Mepo7g02070 7 31020662 31023278 PCT