Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo1g02960 ATGGAAGCCAAGAGTATTGAGAGGAAGAGAACACTGATGATGGAAAAGATGAGAAGGAACAACATGGTGGAAGAAGAAGTGGAAAATGAAGTAGAAGAGGAGGAGGGTGATGTTAGTCTGACTGAAGAAGAGAAGAAAAAAGGTGTCGGTGGCGGGAGAAGAGGAGGTGGCGGCGGTGTTTCTCCACCCTGTTGCCAAGCAGAGAGGTGTGGAGCTGATTTGACTGATGCAAAGAGATATCATCGCCGCCATAAAGTGTGTGAGTTTCATTCCAAGGCACCTGTTGTGGTGGTTGCAGGGATGAGGCAGAGGTTTTGTCAACAATGTAGCAGGTTCCATGACTTGGTAGAGTTTGATGAGTCTAAAAGAAGCTGCCGCAGGCGCTTAGCTGGACACAATGAACGGCGCCGGAAAACCAACCCGGAAGCTGCCAATGAGGGAAGCAGTCACAGCAAAGGACAACATCAACCTAAGGAAACTCAATGCAGGATTCAGATGAACTTACCAGGCAGTTCTGGCTATAAGTCCTTCAACATTAGATGA 543 0.4788 MEAKSIERKRTLMMEKMRRNNMVEEEVENEVEEEEGDVSLTEEEKKKGVGGGRRGGGGGVSPPCCQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVAGMRQRFCQQCSRFHDLVEFDESKRSCRRRLAGHNERRRKTNPEAANEGSSHSKGQHQPKETQCRIQMNLPGSSGYKSFNIR 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo1g02960 180 SUPERFAMILY SBT domain 62 143 IPR036893 GO:0003677|GO:0005634
Mepo1g02960 180 Coils Coil 13 44 - -
Mepo1g02960 180 ProSiteProfiles Zinc finger SBP-type profile. 62 139 IPR004333 GO:0003677
Mepo1g02960 180 MobiDBLite consensus disorder prediction 129 180 - -
Mepo1g02960 180 MobiDBLite consensus disorder prediction 158 180 - -
Mepo1g02960 180 Pfam SBP domain 65 138 IPR004333 GO:0003677
Mepo1g02960 180 MobiDBLite consensus disorder prediction 1 60 - -
Mepo1g02960 180 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 48 151 IPR044817 GO:0003677
Mepo1g02960 180 MobiDBLite consensus disorder prediction 1 25 - -
Mepo1g02960 180 Gene3D - 56 126 IPR036893 GO:0003677|GO:0005634
Mepo1g02960 180 FunFam Squamosa promoter-binding-like protein 14 57 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo1g02960 Mepo-Chr1 32767586 32769302 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo1g02960 1 180 SBP-box Gene Family AT3G15270 48.370 9.38e-43 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mepo1g02960 SBP 2.7e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo6g00459 6 4711318 4713962 Mepo1g02960 1 32767586 32769302 ECH
Mepo1g02960 1 32767586 32769302 Mepo6g00459 6 4711318 4713962 ECH
Mepo1g02960 1 32767586 32769302 Mepo1g02960 1 32767586 32769302 ECH