Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g2305 ATGCAAACGATCATGGATCCCACCAAAAAGCGCAAGCTTGACGAGAACGGCTTCGGCGGCGAAGCTGATCACGTAAAGCTCTCTCCGTCGGAAGCCCGCAAGTTGATCGAGCGGTTCACCCCCGACCAGCTAATCAACATCCTTCAAGACGCCGTCATCCGCCATCCCGACGTTCTCTCCGCCGCTCGGGCAGTTGCAGACACCGACATCTCCCAACGCAAGCTCTTCGTCCGCGGCCTTGGGTGGGACACCACCACCGAGGGCCTCCGCTCACTCTTTTCAACTTACGGTGAACTCGAAGAAGCTATTGTCATCGTCGACAAGGCCACCGGGAAGTCCAAGGGTTACGGCTTTGTCACCTTCCTCCACGTGGACGGTGCTTTATTAGCTCTCCGTGAGCCTAGCAAGCGTATTGATGGGCGCGTTACTGTCACACAGCTGGCCGCAGCAGGGAATTCAGGCTCCAATACCAACACAGCTGACGTGGCGCTCCGCAAAATATATGTATCCAACGTGCCACCGGATCTTGCAGGAGACAAGCTTCTAGCCCACTTCTCAATCTATGGGGAGATTGAGGAAGGTCCATTGGGCTTTGACAAACAGACAGGAAGATCGAAAGGGTTTGCTCTGTTCGTTTATAAGACACCTGAGGGGGCACAGGCTGCATTATTGGAGCCTGTGAAGAATGTGGAAGGGCGACAGTTAAATTGCAAGCTGGCAATTACAGATGGTGGGAAGCAGCAAGGTATGCGTGGTGGGTCGGACGGGGCTCAGGGTCGTGGTGGTGGGAATGCTCATGGAAATGGAATGGGGATGGCTCCTGCAGCTGGGCCTGGGTCCGGTCAATACGGTGGTTCTGCTGGTATGGGTTCTTATGGTGGGTTTTCTGGTGGGCATCAGGGTCAGCCTCCAATGGGTAACCATCCTCTGAATTCGTCTGTGGGTGGTGGTTTGTCTTCTGTGGGTAATCAGGCTCCGTCTTCAATTGCTGGTGCTGGTGGGTATGGTGGTGGTCATTATGGAGGTTATGGTGGGCCAGCGCCAACTGGTTATGGCGGTAGTGGTGGTTATGGAGGAGGTAGTGGTGTGACTGGTGCCGGTGCGGGTGCTGGTGGTGGGCTTGGTTCTGCTGGAGGTGGTGGACTTGGACTTGCTTCCTTGTATAGATTACCAAGTTCAGGTGGAATGCAAGTTGGTGGGTATCCTGACAGTGGACACTATAGTTCATCGGGTTATCAGAATCAGCATCATGCTCCTGCTGGAGCGTCGCCGGTACCAAGGATCCAACCTGGTTCCATGTATCCAAATGTGCCCCCTTACTACTAA 1326 0.546 MQTIMDPTKKRKLDENGFGGEADHVKLSPSEARKLIERFTPDQLINILQDAVIRHPDVLSAARAVADTDISQRKLFVRGLGWDTTTEGLRSLFSTYGELEEAIVIVDKATGKSKGYGFVTFLHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSNTNTADVALRKIYVSNVPPDLAGDKLLAHFSIYGEIEEGPLGFDKQTGRSKGFALFVYKTPEGAQAALLEPVKNVEGRQLNCKLAITDGGKQQGMRGGSDGAQGRGGGNAHGNGMGMAPAAGPGSGQYGGSAGMGSYGGFSGGHQGQPPMGNHPLNSSVGGGLSSVGNQAPSSIAGAGGYGGGHYGGYGGPAPTGYGGSGGYGGGSGVTGAGAGAGGGLGSAGGGGLGLASLYRLPSSGGMQVGGYPDSGHYSSSGYQNQHHAPAGASPVPRIQPGSMYPNVPPYY* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g2305 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 167 233 IPR000504 GO:0003723
Mal5g2305 441 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 75 142 IPR000504 GO:0003723
Mal5g2305 441 CDD RRM_RBM24_RBM38_like 73 148 - -
Mal5g2305 441 MobiDBLite consensus disorder prediction 403 417 - -
Mal5g2305 441 PANTHER GEO13361P1-RELATED 5 410 - -
Mal5g2305 441 SUPERFAMILY RNA-binding domain, RBD 65 150 IPR035979 GO:0003676
Mal5g2305 441 MobiDBLite consensus disorder prediction 399 441 - -
Mal5g2305 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 165 242 IPR000504 GO:0003723
Mal5g2305 441 MobiDBLite consensus disorder prediction 7 23 - -
Mal5g2305 441 MobiDBLite consensus disorder prediction 1 23 - -
Mal5g2305 441 MobiDBLite consensus disorder prediction 305 322 - -
Mal5g2305 441 SUPERFAMILY RNA-binding domain, RBD 157 269 IPR035979 GO:0003676
Mal5g2305 441 MobiDBLite consensus disorder prediction 244 322 - -
Mal5g2305 441 Gene3D - 157 303 IPR012677 -
Mal5g2305 441 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 73 150 IPR000504 GO:0003723
Mal5g2305 441 PANTHER UBP1-ASSOCIATED PROTEIN 2C 5 410 - -
Mal5g2305 441 SMART rrm1_1 74 146 IPR000504 GO:0003723
Mal5g2305 441 SMART rrm1_1 166 238 IPR000504 GO:0003723
Mal5g2305 441 CDD RRM_RBM24_RBM38_like 165 240 - -
Mal5g2305 441 Gene3D - 55 156 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g2305 Mal-Chr5 60410178 60411503 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g2305 161 250 C2H2 Transcription Factor Family AT2G19380 39.785 1.28e-11 64.7