Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0375 ATGGGTCTTCTCTTGAAGATGAAGATGCAGAATCACCACCACCCTTTGGCTTCGAAGTTACAAGAACAAGTGGGGAACAAAAGATACACATTCATTCAAGCACATAGAGCTTGGCTTCTGAAGTTTTTGTTTCTATGGATTCTTCTGATGGCTATAATTAGTTATTGGATCTACAGTAAAATGGATGTCGATACTAAAGTTAGAAGGAAAGAGGTTTTGGGTAGTCTTTGTGATCAAAGGGCTAGAATGTTGCAAGACCAATTCAGTGTTAGTGTCAACCATGTTCATGCTCTTGCTATCCTTGTTTCAACTTTCCATTATTACCGAAACCCTTCTGCTATTGACCAGGAAACTTTTGCAGAATATACGGCTAGGACCGCTTTCGAAAGGCCGTTACTGAGTGGAGTGGCCTATGCACAAAGAGTTGTTAACTCGGAAAGAGAGCGGTTTGAGAAGCAACATGGAGTGGTTATAAACACAATGGAAAGAGAGGCTTCACAGGTTAGGGATGAGTATGCACCGGTCATATTTGCTCAGGAAACCGTCTCTTACCTCGAGTCTATTGATATGATGTCTGGCGAGGAGGACCGAGAGAACATTATGAGAGCTAGGGCTACCGGGAAAGCTGTTCTGACTAGCCCTTTTAGGTTGTTGGGTTCTCATCATCTTGGTGTCGTTTTAACATTTCCTGTTTACAAATCCAAGCTCCCTCCAAACCCAACAACAGAAGAGCTCATCAAAGCAACCGCAGGATATGTTGGAGGATCCTTTGATGTGGAGTCCCTTGTGGAAAATTTACTTGGTCAACTTGCTGGTCATCAAGCAATTTTGGTCAATGTATATGATATCACGAACTCTACTGACCCCCTAATCATGTATGGCAACCAATATGAAGAAGGTGATGTTTCTCTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATCAAATGATATGTAGGTATCACCAGAAGGCGCCGACAAATTGGACAGCACTTACCTATGCATTCCTATTCTTTGTAATTCTTATATTGGTGGGATACATTTTATATGGGGCTGGGAATCATATTGTCAAAGTAGAGGATGATTTCCATGAAATGCAGGAATTGAAAGTTCGAGCAGAAGCAGCTGATGTTGCCAAGTCACAGTTTCTAGCTACTGTCTCTCATGAAATTAGAACACCAATGAATGGCATTTTAGGAATGCTTGGTCTGCTTCTACGCACTGAATTGAACTCAACCCAACGGGATTACGCTCAGACAGCTCAAGCATGTGGGAAGGCTCTGATAGCATTAATAAATGAAGTGCTTGACCGAGCTAAAATTGAAGCTGGCAAATTAGAGCTTGAAGCGGTTCCATTTGACCTCCGTTCCATACTCGACGATGTCCTCTCTCTTTTTTCTGAGAAGTCTAGACACAAAGGTTTAGAGCTGGCAGTGTTTGTTTCTGATAAAGTTCCAGATATTGTTATGGGAGATCCTGGGCGATTCAGACAAATAGTAACAAATCTTGTTGGCAACTCTGTTAAATTCACTGAGCGAGGACATATATTTGTTAAAGTCCATTTAGCTGAAAATAGAAAGTCCGCAGCAATGAATGGAAAATTTGAGACTTTTCGAAATGGAGGATCTGAAGAAGTTTTGCATATATCTGGTGGTTATAATCTCAAAACACTAAGTGGATATGAAGCAGCTGATGAACGCAATAACTGGGATAATTTTAACCATCTAATTGCTGATGAAGAATTTTTCTGCGATCCTTCAACTAAAAAAGTGGCCTCTAATGAATCTTACGAGCAAGTCACCTTGATGGTCTGTGTCGAAGACACAGGAATTGGAATTCCTTTCTCAGCTCAAGATAGGATTTTCAATCCTTTCGTGCAGGCAGATAGCTCAACTTCTAGAAACTATGGTGGAACTGGCATTGGCTTGAGTATCAGCAAGTGCCTGGTTGAACTAATGGGCGGTCAGATAAACTTTATAAGCCGGCCGCAGGTTGGAAGCACCTTTTCGTTTACCGCGGACTTTGGAATATTTAAGAAGAATCCAATAACTGAGGTGAAGAAGGTTAACTATGAAGATCTACCATCCAGTTTTAGAGGGCTTAAAGCTGTTGTGGTTGATGGGAAACCTGTTAGAGCTGCTGTGACAAGATACCATTTGAAGAGACTTGGGATACAAGCTAAAGTCGCAAACGCCATCAATAAGGCTGTTTCTTTATGTGGGAAAAATGGTTCTTTGACCACAGGATTATTCCAGCCTGATATTATTTTTGTTGAGAAAGATTCATGGGTTTGTGGAGAGGACGGGATCTTCAGTGTGCGGCAACTGGACTGGAAACAGAACGGACATATATTTAAGATGCCTCAAATGATCCTTCTTGCGACGAATATTAGTAACGATGAATTTGATAAAGCGAAATCCGCAGGTTTTAGCGATACAGTGATCATGAAGCCGCTGAGAGCCAGTATGGTGGGAGCTTGTCTTCAACAAGTTTTGGGAACAGGCAAGAAGAGACAGCTAGGAAAAGAGATGCCTAATGGTTCGACTTCAGTTCGAAGCCTTCTTTTTGGAAAGAAAATATTAGTGGTTGATGACAATGGAGTGAACCGGAGGGTGGCTGCAGGCGCATTGAAAAATTTCGGAGCTGATGTGAAGTGTGCAGATAGTGGCAAAGCTGCTCTTGAAATGCTTCAATTCCCTCACAATTTTGATGCTTGTTTCATGGATATTCAAATGCCTGAAATGGACGGGTTTGAAGCGACTCGTCGAATTCGGGAGATGGAAAGGACGGCGAATGGTGAATGTGGTGAAGGGAAAAGTGAGTTCCATCTACCTATATTGGCCATGACAGCAGATGTAATCCATGCTACATATGAAGAGTGTTTAAAATGTGGGATGGATGGTTATGTCTCAAAACCTTTTGAGGAAGAGAATCTTTATCAAGCAGTTGCAAAGTTTTTCCAGACCAAACCTACTTCGGTAGATTCATGA 3003 0.4169 MGLLLKMKMQNHHHPLASKLQEQVGNKRYTFIQAHRAWLLKFLFLWILLMAIISYWIYSKMDVDTKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNPSAIDQETFAEYTARTAFERPLLSGVAYAQRVVNSERERFEKQHGVVINTMEREASQVRDEYAPVIFAQETVSYLESIDMMSGEEDRENIMRARATGKAVLTSPFRLLGSHHLGVVLTFPVYKSKLPPNPTTEELIKATAGYVGGSFDVESLVENLLGQLAGHQAILVNVYDITNSTDPLIMYGNQYEEGDVSLVHESKLDFGDPYRKHQMICRYHQKAPTNWTALTYAFLFFVILILVGYILYGAGNHIVKVEDDFHEMQELKVRAEAADVAKSQFLATVSHEIRTPMNGILGMLGLLLRTELNSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAENRKSAAMNGKFETFRNGGSEEVLHISGGYNLKTLSGYEAADERNNWDNFNHLIADEEFFCDPSTKKVASNESYEQVTLMVCVEDTGIGIPFSAQDRIFNPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGIFKKNPITEVKKVNYEDLPSSFRGLKAVVVDGKPVRAAVTRYHLKRLGIQAKVANAINKAVSLCGKNGSLTTGLFQPDIIFVEKDSWVCGEDGIFSVRQLDWKQNGHIFKMPQMILLATNISNDEFDKAKSAGFSDTVIMKPLRASMVGACLQQVLGTGKKRQLGKEMPNGSTSVRSLLFGKKILVVDDNGVNRRVAAGALKNFGADVKCADSGKAALEMLQFPHNFDACFMDIQMPEMDGFEATRRIREMERTANGECGEGKSEFHLPILAMTADVIHATYEECLKCGMDGYVSKPFEEENLYQAVAKFFQTKPTSVDS* 1001
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0375 1000 SMART CHASE_2 110 295 IPR006189 -
Mal5g0375 1000 Gene3D - 447 684 IPR036890 -
Mal5g0375 1000 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 449 IPR036097 GO:0000155|GO:0007165
Mal5g0375 1000 SMART HKATPase_4 495 681 IPR003594 -
Mal5g0375 1000 Gene3D - 700 840 - -
Mal5g0375 1000 Gene3D - 858 997 - -
Mal5g0375 1000 PANTHER TWO-COMPONENT HISTIDINE KINASE 24 994 - -
Mal5g0375 1000 CDD HisKA 383 444 IPR003661 GO:0000155|GO:0007165
Mal5g0375 1000 Gene3D - 357 446 - -
Mal5g0375 1000 Coils Coil 433 453 - -
Mal5g0375 1000 Pfam CHASE domain 113 293 IPR006189 -
Mal5g0375 1000 PANTHER HISTIDINE KINASE 4 24 994 - -
Mal5g0375 1000 CDD HATPase_EvgS-ArcB-TorS-like 500 679 - -
Mal5g0375 1000 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 437 676 IPR036890 -
Mal5g0375 1000 PRINTS Bacterial sensor protein C-terminal signature 606 620 IPR004358 GO:0016310|GO:0016772
Mal5g0375 1000 PRINTS Bacterial sensor protein C-terminal signature 641 659 IPR004358 GO:0016310|GO:0016772
Mal5g0375 1000 PRINTS Bacterial sensor protein C-terminal signature 624 634 IPR004358 GO:0016310|GO:0016772
Mal5g0375 1000 PRINTS Bacterial sensor protein C-terminal signature 665 678 IPR004358 GO:0016310|GO:0016772
Mal5g0375 1000 ProSiteProfiles Histidine kinase domain profile. 390 681 IPR005467 -
Mal5g0375 1000 ProSiteProfiles Response regulatory domain profile. 863 991 IPR001789 GO:0000160
Mal5g0375 1000 CDD REC_hyHK_CKI1_RcsC-like 864 987 - -
Mal5g0375 1000 Pfam Response regulator receiver domain 864 987 IPR001789 GO:0000160
Mal5g0375 1000 SMART REC_2 862 987 IPR001789 GO:0000160
Mal5g0375 1000 SUPERFAMILY CheY-like 861 992 IPR011006 -
Mal5g0375 1000 ProSiteProfiles CHASE domain profile. 110 322 IPR006189 -
Mal5g0375 1000 Pfam His Kinase A (phospho-acceptor) domain 383 448 IPR003661 GO:0000155|GO:0007165
Mal5g0375 1000 ProSiteProfiles Response regulatory domain profile. 706 836 IPR001789 GO:0000160
Mal5g0375 1000 SUPERFAMILY CheY-like 702 837 IPR011006 -
Mal5g0375 1000 Gene3D - 61 113 - -
Mal5g0375 1000 SMART HisKA_10 383 448 IPR003661 GO:0000155|GO:0007165
Mal5g0375 1000 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 495 679 IPR003594 -
Mal5g0375 1000 Gene3D CHASE domain 114 329 IPR042240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0375 Mal-Chr5 5724274 5729380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0375 24 1000 Histidine Kinase Gene Family AT2G01830 70.938 0.0 1385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mal5g0375 HATPase_c 4.5e-31 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0375 5 5724274 5729380 Mal5g0375 5 5724274 5729380 ECH