Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0350 ATGGTGAAAGCAGCGAGCGAGAATGGTTGTAGTTCTACTACTGCGGTGGCTCCTTTCTTGAACAAGTGTTACGATATGGTTGAAGATCATTCCACCGACTCAATCATCTCTTGGTCCGCTGGTAACAATAGTTTCATCATCTCCAACTCTGATCAATTCTCTCTTACTCTTCTCCCCAATTATTTCAAACACAACAATTTCTCCAGCTTCGTCAGACAACTCAATATCTATGGTTTCAGGAAAATTGATGCAGATCACTGGGAATTCGCCAATGAAAATTTCATTCGGGGTCAAAAGCATTTGCTGAAGAATATACGTAGAAGGAAACATCCACATGTTGCTGCAGATCAGCAAAAAGCATTGCCGAAGAAAGACAATTGTAATGAACCATCACAAGAAGCACCAAATCACAGCCTTTGGAGAGAAGTTGAGAATCTAAAATCGGATAGAAAAACCCTCACGCAGGAGTTGGTCAAACATAAGCAGCGCCTCGAATCTTCTGAGAGTAAGTTGCTTCTACTGAGTGATCGTCTTGAAGGAATGGAGAAGCATCAGCAGCAGATGCTATCGTTCTTGGTCATGGTCGTGCAATGCCCTGGATTCTTGGTTCAGTTGCTTCACCCTAAGGAAAATAACTGGCGTTTCACTGAAGCAGGGAATATGTGGGACCAAGATAACCAAGATGACAGATCAGTTTCTTCTGATGGGATGATTATAAAGTATACGCCACCTGTTGCTGAAAAACTAAAGCCTGTAGTTCCACGATCTCCTGCCTTTGATAAGCAACCAGAACCTGAGATTTCTGCAGATGGGTTAAAAGACTTGTGCATCAGTTCCGAGTTCTTGAAATTGCTACTAGATGAGAAATTGTGTCCATTAGATAATCATTCTCCGTTTCTTGTCCCGGATTTACCTGATGACGGTTCGTGGGAACAACTATTTTTAGGCAGTCCTTTCCTCAAAAATGTTGAAGATACGGATCGTGAAAACGAGGAGCACACTGTTAGTGACATGGAGATGGAACACATCATATCTGAAGCTCTAAATGAAAGATCTGATTTTGAAGCGATGATTATAGAAATGGAGAACACTCACGCATGA 1101 0.4187 MVKAASENGCSSTTAVAPFLNKCYDMVEDHSTDSIISWSAGNNSFIISNSDQFSLTLLPNYFKHNNFSSFVRQLNIYGFRKIDADHWEFANENFIRGQKHLLKNIRRRKHPHVAADQQKALPKKDNCNEPSQEAPNHSLWREVENLKSDRKTLTQELVKHKQRLESSESKLLLLSDRLEGMEKHQQQMLSFLVMVVQCPGFLVQLLHPKENNWRFTEAGNMWDQDNQDDRSVSSDGMIIKYTPPVAEKLKPVVPRSPAFDKQPEPEISADGLKDLCISSEFLKLLLDEKLCPLDNHSPFLVPDLPDDGSWEQLFLGSPFLKNVEDTDRENEEHTVSDMEMEHIISEALNERSDFEAMIIEMENTHA* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0350 366 Pfam HSF-type DNA-binding 19 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal5g0350 366 Coils Coil 143 170 - -
Mal5g0350 366 SMART hsfneu3 15 108 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal5g0350 366 PRINTS Heat shock factor (HSF) domain signature 57 69 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal5g0350 366 PRINTS Heat shock factor (HSF) domain signature 70 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal5g0350 366 PRINTS Heat shock factor (HSF) domain signature 19 42 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal5g0350 366 Gene3D - 11 109 IPR036388 -
Mal5g0350 366 MobiDBLite consensus disorder prediction 113 136 - -
Mal5g0350 366 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 1 350 - -
Mal5g0350 366 ProSitePatterns HSF-type DNA-binding domain signature. 58 82 IPR000232 GO:0003700|GO:0006355|GO:0043565
Mal5g0350 366 SUPERFAMILY "Winged helix" DNA-binding domain 15 108 IPR036390 -
Mal5g0350 366 Coils Coil 344 364 - -
Mal5g0350 366 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 350 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0350 Mal-Chr5 5499692 5501517 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0350 16 318 HSF AT1G67970 47.213 3.35e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Mal5g0350 HSF_DNA-bind 3e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0350 5 5499692 5501517 Mal5g0350 5 5499692 5501517 ECH