Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0344 ATGGCTATGGCAAGAGATAAAAAAGAAGATGAAGAAGAGGTACACAATCAAAATCAAAAAGGTGGGAAGAGATTGAAATGCATGAACAAGATGAAGAATGAACAAGAAAAGCAAGTAGTATATGAAGAAGAAGAAGAAGAAAGTGAGCTTCCTTTGAAACCAGAGCTTTTCTTCTACCCAACAACACCAACATCCTTTGTTGTATCAGATGCACTTGAATTAGATTTTCCAATCATTTATGTTAACAAAGTCTTTGAAATTTCAACTGGGTATCGTGCTCATGAAGCCCTTGGTCGCAACTGCCGGTTCTTACAGTACAGGGATCCTCGAGCTCAGAGGCGGCACCCTTTGGTGGATCCAGTTGTTGTGTCTGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGTACTCCTTTAGTCAACAGACTCAGGCTTACACCAATTCATGATGATGATGGAGTCGTGACACACGTAATAGGTATCCAAATCTTTTCCGAGGCAAACATAGACTTGAACCGTGTTTCCTATCCAGTTTTCAGAGAGACTTGCATTCAAGATTTTGATAAAAATGCTAAATATTCTCCCAAGAGTGGGAAATTATTGTACACTCCGCAGCAGCGCGAAGAGATGTGTGGCATTCTTCAGCTTTCTGATGAAGTCTTGGCGCACAACATATTGTCACGCTTGACACCGAGGGATGTTGCATCGATCGGTTCTGTTTGCAGGAGGATCCGTCAATTAACAAAGAACGAGCATGTTAGGAAGATGGTTTGTCAAAATGCATGGGGAAAAGAAGTGACAGGTACATTGGAACTTATGACCAAGAAGTTAGGATGGGGTCGTCTGACTCGGGAGCTTACTACTCTCGAGGCTGTTTGCTGGAAAAAAGTGACAGTTGGAGGCGGGGTTGAGCCTTCGCGTTGCAATTTCAGTGCTTGTGCTGCAGGAAATAGGCTTGTATTATTTGGAGGTGAAGGAGTGGATATGCAGCCTATGGATGATACTTTTGTTCTTAATCTTGATGCTAAGAATCCAGAATGGCAAAGGGTTAGTGTGATATCATCCCCGCCCGGACGATGGGGCCACACACTCTCTTGCTTAAACAGTTCTTGGCTAGTTGTTTTTGGTGGATGTGGTAGGCAAGGATTGCTCAATGATGTGTTTGTGCTTGATTTAGATGCTCAACAGCCAACATGGAAGGAAGTCTTCGGCGAAGCACCACCTCTTCCGAGATCTTGGCACAGCTCATGCACAATTGAAGGCTCAAAATTGGTTGTCTCGGGCGGTTGCACAGATGCTGGAGTACTTCTTAGTGACACATATTTACTTGACCTCACAATAGATAATCCTACATGGAGAGAAATTCCATCTTCATGGACTCCTCCTTCTAGGTTAGGGCACTCACTCTCAGTTTATGGTAGGACAAAGATTCTTATGTTTGGTGGACTTGCAAAGAGTGGACACTTAAGGTTAAGATCAGGTGAGGCTTATACAATTGATTTAGAAGCTGAACAGCCACAATGGAGGCAGCTAGAATGTAGTGCGTTCAATGGTTTATCAAATCAAAATGCTGTTGTCCCGCCTCCTAGACTAGATCATGTTGCTGTAAGCATGCCTTGTGGGAGAGTTATTATATTTGGAGGTTCCATTGCTGGTCTTCATTCGCCATCTCAGCTATTTCTATTGGACCCTTCCGAAGAGAAACCAACCTGGAGGATCCTCAATGTTCCGGGGGAACCACCTAAATTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTTTTGGTGTTGGGTGGACATACCGGGGAGGAATGGGTACTCAATGAGTTGCATGAGTTATGCTTGGCAAGCCGACAAGACTCTGACATGTGA 1914 0.4399 MAMARDKKEDEEEVHNQNQKGGKRLKCMNKMKNEQEKQVVYEEEEEESELPLKPELFFYPTTPTSFVVSDALELDFPIIYVNKVFEISTGYRAHEALGRNCRFLQYRDPRAQRRHPLVDPVVVSEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLTPIHDDDGVVTHVIGIQIFSEANIDLNRVSYPVFRETCIQDFDKNAKYSPKSGKLLYTPQQREEMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVCWKKVTVGGGVEPSRCNFSACAAGNRLVLFGGEGVDMQPMDDTFVLNLDAKNPEWQRVSVISSPPGRWGHTLSCLNSSWLVVFGGCGRQGLLNDVFVLDLDAQQPTWKEVFGEAPPLPRSWHSSCTIEGSKLVVSGGCTDAGVLLSDTYLLDLTIDNPTWREIPSSWTPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEAEQPQWRQLECSAFNGLSNQNAVVPPPRLDHVAVSMPCGRVIIFGGSIAGLHSPSQLFLLDPSEEKPTWRILNVPGEPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASRQDSDM* 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0344 637 SUPERFAMILY PYP-like sensor domain (PAS domain) 71 173 IPR035965 -
Mal5g0344 637 MobiDBLite consensus disorder prediction 1 20 - -
Mal5g0344 637 SUPERFAMILY Kelch motif 537 627 IPR015915 GO:0005515
Mal5g0344 637 SUPERFAMILY Kelch motif 305 522 IPR015915 GO:0005515
Mal5g0344 637 Gene3D PAS domain 59 184 - -
Mal5g0344 637 Pfam Galactose oxidase, central domain 318 368 - -
Mal5g0344 637 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 16 635 - -
Mal5g0344 637 SMART pac_2 137 178 IPR001610 -
Mal5g0344 637 Gene3D - 501 629 IPR015915 GO:0005515
Mal5g0344 637 Pfam PAS domain 73 173 IPR000014 -
Mal5g0344 637 PANTHER ADAGIO PROTEIN 3 16 635 - -
Mal5g0344 637 CDD PAS 62 172 IPR000014 -
Mal5g0344 637 Gene3D - 294 500 IPR015915 GO:0005515
Mal5g0344 637 Pfam Galactose oxidase, central domain 432 483 - -
Mal5g0344 637 Pfam Galactose oxidase, central domain 383 430 - -
Mal5g0344 637 TIGRFAM sensory_box: PAS domain S-box protein 75 172 IPR000014 -
Mal5g0344 637 Pfam F-box domain 224 261 IPR001810 GO:0005515
Mal5g0344 637 Gene3D - 217 268 - -
Mal5g0344 637 SUPERFAMILY F-box domain 217 276 IPR036047 GO:0005515
Mal5g0344 637 Pfam Kelch motif 542 589 IPR011498 GO:0005515
Mal5g0344 637 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0344 Mal-Chr5 5432795 5435421 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0344 65 186 AGC Kinase Gene Family AT5G58140 33.871 1.13e-12 69.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0344 5 5432795 5435421 Mal5g0344 5 5432795 5435421 ECH