Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0328 ATGGTTATGGTTATGGGTGGTAGTTGGAAGGTGGCGATGTTAATGTCGTCGTCGTTGAGTCACGTGCGTCCGCTAACATGCGCATCATCTTCATCACGAATAGCACCTCATCCACACGACCTCATCAAATGGGTAACCAGAGAAGGTGGATACGTGCACCGTGCTGTGAAGATAGCTCAACTCGATTCCTCCAATGGTCTAGGGTTAGTGGCTAAGGAAGAAATCCCAATTGGCACTGACCTAATTCTTCTTCCTCAACACATTCCTTTGCACTTCACCACCTCTCTTCATCAACATCAGGATGATGATGACAACTCTCTCCTCCTTCAATTGGCCTCCCATATACCTGATGAACTATGGGCAATGAAACTGGGTTTGAAGCTTCTCCATGAAAGGGCAAAACTTGGATCTTTTTGGTGGCCATACATCAGTAATCTCCCACAAACTTACACTCTTCCTATCTTCTTTCCTGGGGAAGACATCAAGAATTTGCAGTATGCTCCTATTCTTCACCAGGTAAATAAAAGATGCCGATTTCTTCTTGATTTTGAGCAAAAAGTCAAGCATGCATTAGTCGGTCTTACACCAGATAAGCATCCTTTTGGTGGCCAAGAAGTAGATGCTTCATCCCTTGGATGGGCGATGTCAGCAGTTTCATCTAGAGCATTCAAGTTACATGGTAACAAGCAATCAAATGGGATAAACTTTGACATTCCCATGATGCTCCCTCTAATTGACATGTGTAATCATAGTTTCAATCCGAATGCTAGAATTGTTCAGGAACAAGAAACTGACAGCACAAAGATGCGGGTGAAGGTTGTGGCTGAGAAAGCAATCAAGGAAGACGATCCTTTGTTACTTTGCTATGGTTGTTTAAGCAATGATTTTTTCCTTCTTGATTATGGATTTGTGATACAATCAAATCCTTATGACTGTATTGAGCTCAAATATGATGGTGCTCTTTTGGATGCTGCGAGCATGGCAGCTGGAGTTTCTTCACCAAATTTCTCCACACCTGCTTCATGGCAGAAACTTATTTTATCTCAGCTAAATCTAGCTGGAGAAGCTCCAGATCTCAAGGTGAGCTTAGGCGGTCAAGAAATAATAGAAGGTCGTTTGTTGGCTGCACTGAGAGTACTCCTTGCAAGTGATATGGAAACTGTACAAAAGCATGACCTCAACACACTCAAATCTTTAGAGGCTGAGGCTCCTCTTGGTGTTGCAAATGATCTTGCTGTATTTCGTACCTTGATTGCCCTGTGTGTCATTGCACTAGGACACTTTCCGACCAAATTAATGGATGACGAATCTTTATTGAAGCAGGGTGTTTCAGGTTCAACAGAGTTAGCCATTCAGTTTAGAATCCAAAAGAAGTCTGTAATCATAGATGTGATGAAAAACCTCTCAAGGAGGGTAAAGCTTCTTTCATCAAAGGAGACAGTTACTGCTGAAGGCTAA 1458 0.4252 MVMVMGGSWKVAMLMSSSLSHVRPLTCASSSSRIAPHPHDLIKWVTREGGYVHRAVKIAQLDSSNGLGLVAKEEIPIGTDLILLPQHIPLHFTTSLHQHQDDDDNSLLLQLASHIPDELWAMKLGLKLLHERAKLGSFWWPYISNLPQTYTLPIFFPGEDIKNLQYAPILHQVNKRCRFLLDFEQKVKHALVGLTPDKHPFGGQEVDASSLGWAMSAVSSRAFKLHGNKQSNGINFDIPMMLPLIDMCNHSFNPNARIVQEQETDSTKMRVKVVAEKAIKEDDPLLLCYGCLSNDFFLLDYGFVIQSNPYDCIELKYDGALLDAASMAAGVSSPNFSTPASWQKLILSQLNLAGEAPDLKVSLGGQEIIEGRLLAALRVLLASDMETVQKHDLNTLKSLEAEAPLGVANDLAVFRTLIALCVIALGHFPTKLMDDESLLKQGVSGSTELAIQFRIQKKSVIIDVMKNLSRRVKLLSSKETVTAEG* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0328 485 Gene3D set domain protein methyltransferase, domain 1 8 303 - -
Mal5g0328 485 PANTHER F21J9.27 15 482 - -
Mal5g0328 485 SMART set_7 54 296 IPR001214 GO:0005515
Mal5g0328 485 CDD SET_LSMT 55 304 - -
Mal5g0328 485 Gene3D - 332 481 IPR036464 -
Mal5g0328 485 SUPERFAMILY SET domain 36 308 IPR046341 -
Mal5g0328 485 Pfam Rubisco LSMT substrate-binding 341 460 IPR015353 -
Mal5g0328 485 Pfam SET domain 66 290 IPR001214 GO:0005515
Mal5g0328 485 ProSiteProfiles SET domain profile. 56 290 IPR001214 GO:0005515
Mal5g0328 485 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 15 482 - -
Mal5g0328 485 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 300 479 IPR036464 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mal5g0328 SET 2.5e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0328 5 5284788 5288166 Mal5g0328 5 5284788 5288166 ECH