Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal5g0319 ATGGACGACGTAAAAGACAAGATGAAAGGTTTCATGAAGAAAGTCACTTCTTCATCCTCTGGTAAATTCAAGGGTCAAGGTCGAGTCTTGGGTTCTTCTTCATCATCATCCACACCCGTTAATTCCATTCCTACCCCTACGCTTCGTCCTTCTCAGAATCCTAATCCTAATCCCAAACCTAAACCCAGACCTACTTCACCGATCGCTTCGGATCAAACCAAAATCGACAAACCACGAAAACCCGCAGATGGGTTTGATCCATTTGATTCATTGGTTACTTCTTCTCAAAGATCTCAAAATGGGTATTCACTTAATGTATATGAATGCCCTATTTGTAAACAACCCTTTCGTTCAGAAGACGAGGTTTCTGAACATGTTGATACTTGTTTGAGTAATTCAATTGAGCGTGTTGATAATGATGAAGAATGTGTTTTGGAATTGAAAGAGAGTGAAATTGTTGGTGAGTGTAATACTGAATTGGAGATTTGTATTGGTACTTATGTTTCAGGGAATCCATCCGAAGGATCGGTGGATATTGTTCTTAAATTGTTGAGGAATATTGTTAAGGAACCTGAGAATGTTAAGTTTAGGAAGATTAGGATGGGTAATCCAAAGATTAAAGAAGCTGTTGCTGAGGTTAGTGGTGGGGTTGAATTGCTGAGCTTTTTAGGATTTGAGCTTAGGGAGGAGAATGGAGAGACATGGGCGTTGATGGAGATTCCTGCGGAGGAGAGGATAAGTTTGATTAAGAAAGCAATTGTGTTGTTGGAACCGCAATTGGTACAAGATCCTCCAAAGAGAGAGACTTTGACGCCTACTGTTTCTGTTGAGAAAGTAGCAGAAGCCGAACCAAAAAAGATCGACAGACAGGTGAAGGTCTTCTTTGCTGTCTCTGAAAGTGTTGCAGCTAAAATTGAGCTGCCAGATTCCTTCTACAAACGTTCAGCTGAAGAGGTGAGAAGAGAAGCTGAGTTAAGGAGAAAAAAGATTGAAGAGTCTCAGCTTTTAATTCCAAAGTCACTTAAAGAAAAGCAAGCTAAAGCTGCGAAGAGGAGATACACAAGAACTATTATTAGGATTCAGTTTCCAGATGGAGTTGTACTTCAAGGAGTATTTGCTCCATGGGAACCAACTACTGCTCTGTATGAGTTTGTGAGCTCTGCTTTAAAAGAATCATGTTTGGAATTTGAGCTAATGCATCCTGTAGTTGTTCAACGGCGTGTGATCCCATGTTTCCCAAAAGCAGGGCAAAAAGCCAAAACGGTAGAGGAAGAAGACCTGGTACCTTCGGCCCTAATCAAGTTCAAGCCCCTAGAAACAGATTCTGTTGTTTTCACCGGTCTCAAAAATGAATTGCTGGAGATCAGTGAACCACTTGTAAATGGTTAA 1389 0.4082 MDDVKDKMKGFMKKVTSSSSGKFKGQGRVLGSSSSSSTPVNSIPTPTLRPSQNPNPNPKPKPRPTSPIASDQTKIDKPRKPADGFDPFDSLVTSSQRSQNGYSLNVYECPICKQPFRSEDEVSEHVDTCLSNSIERVDNDEECVLELKESEIVGECNTELEICIGTYVSGNPSEGSVDIVLKLLRNIVKEPENVKFRKIRMGNPKIKEAVAEVSGGVELLSFLGFELREENGETWALMEIPAEERISLIKKAIVLLEPQLVQDPPKRETLTPTVSVEKVAEAEPKKIDRQVKVFFAVSESVAAKIELPDSFYKRSAEEVRREAELRRKKIEESQLLIPKSLKEKQAKAAKRRYTRTIIRIQFPDGVVLQGVFAPWEPTTALYEFVSSALKESCLEFELMHPVVVQRRVIPCFPKAGQKAKTVEEEDLVPSALIKFKPLETDSVVFTGLKNELLEISEPLVNG* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal5g0319 462 MobiDBLite consensus disorder prediction 1 94 - -
Mal5g0319 462 SUPERFAMILY PUG domain-like 170 256 IPR036339 -
Mal5g0319 462 Gene3D Classic Zinc Finger 103 133 - -
Mal5g0319 462 Pfam PUB domain 174 247 IPR018997 -
Mal5g0319 462 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 461 - -
Mal5g0319 462 CDD PUB 173 257 - -
Mal5g0319 462 SMART PGNneu 175 242 - -
Mal5g0319 462 Gene3D - 345 438 - -
Mal5g0319 462 SUPERFAMILY Ubiquitin-like 322 435 IPR029071 -
Mal5g0319 462 Pfam UBX domain 353 401 IPR001012 GO:0005515
Mal5g0319 462 MobiDBLite consensus disorder prediction 13 48 - -
Mal5g0319 462 ProSiteProfiles UBX domain profile. 351 435 IPR001012 GO:0005515
Mal5g0319 462 Coils Coil 313 333 - -
Mal5g0319 462 MobiDBLite consensus disorder prediction 49 65 - -
Mal5g0319 462 Gene3D - 169 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal5g0319 Mal-Chr5 5201854 5204731 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal5g0319 1 383 C2H2 Transcription Factor Family AT2G01650 57.789 1.06e-150 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal5g0319 PUB 8.2e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal5g0319 5 5201854 5204731 Mal5g0319 5 5201854 5204731 ECH