Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g0948 ATGGAGTGGGCAGATTTCTTCTTGGTGGCAACAACAACCTTGGGCTTCATTATTACATGCAAACATCTCATCCATGTTCTCAACTGGGTATGGGTAATGTTCCTGAGACTGCCAAAACAACTCAAACAATATGGTTCATGGGCTGTAATCACCGGCTCCACTGATGGAATCGGCAAAGCCATGTCCTTTGAGTTAGCATCTCAGGGACTCAACCTTCTATTAATCGGTCGAAACCCTACAAAGCTTGAGGCGACATCGAAGGAGATAAGAGATAAGTACCATGTTGAGGTGAAGATTTTGGTGCTGGACATGCAGTATGTGAAGGGAGAGGAAATGGGAAAATTAATTGTGGAAGCCATTGATGGTTTGGATGTTGGTTTGGTAGTTAATAGTGCAGGATTGGCGTACCCTTATGCTAGATTCTTTCATGAGGTTGATGCGGAGCTTATGGATGCTGTTGTGAAAGTGAATGTGGAGGGATTGACTTGGGTCACCAAAGCTGTGCTTCCAGGCATGATCAAGAAGAAAAAAGGAGCAATTGTGAACATTGGTTCTGGTTCCACTTTTGTGCTTCCTTCTTATCCTCTCGTCACTCTTTATGCTGCTACAAAAGCATATCTTGCAATGTTCTCGAGATGCATCAGTTTAGAATACAAGCATCACGGAATTGACATCCAGTGTCAGATTCCATTATTTGTGTCAACAAAGATGAGCAAGATGGGGTCCTCTCTTTTTGTTCCAACGCCGGAAATGTATAGCAAATCATGCACAAGATGGATTGGCTACGAAAACCTGGTTGTGCCATATTTTCTTCATTCTCTGCAGGGGTTTCTCATAAGTGCAATTCCTGATGCATTGGTGGATTCATTCATGTTGCGTTATTTCCTTTACTTTCGCAGAAGAGGATTTCTCAAGGACTCCAAAATTAAAGGATCAAAGGCATCATCTACATCTGAAGCTAACATCACTCCATGA 975 0.4256 MEWADFFLVATTTLGFIITCKHLIHVLNWVWVMFLRLPKQLKQYGSWAVITGSTDGIGKAMSFELASQGLNLLLIGRNPTKLEATSKEIRDKYHVEVKILVLDMQYVKGEEMGKLIVEAIDGLDVGLVVNSAGLAYPYARFFHEVDAELMDAVVKVNVEGLTWVTKAVLPGMIKKKKGAIVNIGSGSTFVLPSYPLVTLYAATKAYLAMFSRCISLEYKHHGIDIQCQIPLFVSTKMSKMGSSLFVPTPEMYSKSCTRWIGYENLVVPYFLHSLQGFLISAIPDALVDSFMLRYFLYFRRRGFLKDSKIKGSKASSTSEANITP* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g0948 324 PANTHER RH59310P 3 309 - -
Lja6g0948 324 PANTHER ENOYL-(ACYL CARRIER) REDUCTASE 3 309 - -
Lja6g0948 324 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 41 299 IPR036291 -
Lja6g0948 324 PIRSF 11-beta-HSD1 2 305 - -
Lja6g0948 324 Gene3D - 40 263 - -
Lja6g0948 324 PRINTS Glucose/ribitol dehydrogenase family signature 200 219 IPR002347 -
Lja6g0948 324 PRINTS Glucose/ribitol dehydrogenase family signature 47 64 IPR002347 -
Lja6g0948 324 PRINTS Glucose/ribitol dehydrogenase family signature 123 134 IPR002347 -
Lja6g0948 324 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Lja6g0948 324 PRINTS Glucose/ribitol dehydrogenase family signature 172 188 IPR002347 -
Lja6g0948 324 CDD 17beta-HSD1_like_SDR_c 45 283 - -
Lja6g0948 324 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 187 215 IPR020904 GO:0016491
Lja6g0948 324 Pfam short chain dehydrogenase 47 239 IPR002347 -
Lja6g0948 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 123 134 IPR002347 -
Lja6g0948 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 178 186 IPR002347 -
Lja6g0948 324 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 200 219 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g0948 Lja-Chr6 21120768 21125455 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g0948 14 307 Lipid Metabolism Gene Families AT1G67730 48.986 1.51e-106 312
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0828 4 6893078 6896675 Lja6g0948 6 21120768 21125455 PCT