Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1139 ATGATCAACTCTCAACAAACACAAGAATTCAAATCTGCAAGAACAGTAGTCGACTCATACATGTGGCCTACATTAGTGGCTAATAAGATACTCAAAAAGAGATTAGGAAGCAACAACTTCATAGCAGATTATCCTAGATATGAAGAACCCTTGTTGGGTATTGCAGACATTGATCATAGCTCAAAAACAGTTCTCAATGATCACAAGGACACACAAAAATACAAGGTATTTGTCAGCACATGGAACGTTGGTGGAGTTGCACCAGATGAAGGTTTGAATATAGATGATTTGTTGGAGACAGATAACCACTCTTGTGACATCTATATACTTGGGTTTCAAGAAGTGGTTCCTCTAAAAGCCTCAAATGTATTTGGATCTGAAAATAATGAGATTTCTACAAAATGGAATTCCATAGTCAGGGAAGCTCTGAACAAGAGAACACACAAGAAGGACAAAGATCAAGGTGATGTTAAAAACCAGGAGATAAAGAATATTTGTCCTTATGAAGAAGAAGGCCCACAAGATTTCCAATGTATCATTAGCAAGCAAATGGTTGGAATATTCATAACTGTGTGGACAAGGAGAGATCTTCGTGCATTCATTAGGCATCCAAGTGTCTCATGTGTTGGCTGTGGCATAATGGGATGCTTAGGAAACAAGGGTTCAGTTTCAGTGAGGTTTCAGTTACATGAAACAAGCTTCTGCTTTGTGTGCAGCCATCTAGCTTCAGGGGGCAGAGAAGGGGATGAGAAATGTAGGAACTCTAATGTTGCTGAAATATTTTCAAGGACCACATTTCCTAGAGGCCCTTTATTTGATTTGCCAAGAACAATTCTAGATCATGATCATGTAATATTGCTTGGAGATTTAAATTATAGAATTTCTCTACCAGAAGAAACAACACGCTCACTTGTTGAAACAAGGGACTGGGATTCCTTATTAGAAAATGATCAGCTAATGATGGAGCTAATGGCCGGAAACATATTAAAAGGATGGCACGAAGGAGTAATCAAATTTGCTCCTACCTACAAGTATTTTCCAAATTCAGACATGTACTATGGCTGTTTTTATCATGGAAAAAAGCCAGAGAAGAGGAGAGCACCAGCATGGTGTGATCGAATAGTATGGTACGGGAAGGGTTTAAAGCAACTTCAGTATGCTAGAAGTGAATCAAAACTATCAGATCACAGGCCTGTTAAAGCAGTGTTTTCAGCAGAAGTCAGGGTTTTACCAGAGTTGACAAGGGTGCAAAGCTTGTTTCTATCAGAAAGATTCGAGCAAATTGAATCTCCTTTTGAAGTTTCCACCACTGATGAATTTGTATTTAGGAAAAAAACATCAAGCTTCCGGTTGTAA 1356 0.3857 MINSQQTQEFKSARTVVDSYMWPTLVANKILKKRLGSNNFIADYPRYEEPLLGIADIDHSSKTVLNDHKDTQKYKVFVSTWNVGGVAPDEGLNIDDLLETDNHSCDIYILGFQEVVPLKASNVFGSENNEISTKWNSIVREALNKRTHKKDKDQGDVKNQEIKNICPYEEEGPQDFQCIISKQMVGIFITVWTRRDLRAFIRHPSVSCVGCGIMGCLGNKGSVSVRFQLHETSFCFVCSHLASGGREGDEKCRNSNVAEIFSRTTFPRGPLFDLPRTILDHDHVILLGDLNYRISLPEETTRSLVETRDWDSLLENDQLMMELMAGNILKGWHEGVIKFAPTYKYFPNSDMYYGCFYHGKKPEKRRAPAWCDRIVWYGKGLKQLQYARSESKLSDHRPVKAVFSAEVRVLPELTRVQSLFLSERFEQIESPFEVSTTDEFVFRKKTSSFRL* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1139 451 Pfam Endonuclease/Exonuclease/phosphatase family 80 396 IPR005135 GO:0003824
Lja4g1139 451 Gene3D Endonuclease/exonuclease/phosphatase 56 430 IPR036691 -
Lja4g1139 451 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 25 427 - -
Lja4g1139 451 SUPERFAMILY DNase I-like 71 409 IPR036691 -
Lja4g1139 451 SMART i5p_5 72 411 IPR000300 GO:0016791|GO:0046856
Lja4g1139 451 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 25 427 IPR045849 GO:0004445|GO:0046855
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1139 Lja-Chr4 10064264 10068476 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1139 72 417 Acyl Lipid Metabolism Gene Families AT1G65580 28.715 4.67e-35 136
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1139 4 10064264 10068476 Lja4g1139 4 10064264 10068476 ECH