Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1133 ATGACAGGGTCTCTAATGGGGTTGTTGTTGCTCCTATTTTGCTCTATGCTTTCTGTTTTGGCTTCTGGTTCATCCAGAAACTTGCCTATCATGGCCTTTGATGAAGGGTACACACCTTTGTTTGGGGACAATAACTTGGTTATCCACAGTGATGGGAAATTGGTTCATCTTTCACTGGATGAGAGAACAGGTTCTGGGTTTGTGTCTCATGATCTTTACCTTCATGGGTATTTCAGTGCTTCCATTAAGTTGCCTGCTGATTACACTGCTGGGGTTGTGGTTGCCTTTTATATGTCAAATGGTGACATGTTCCAGAACAATCATGATGAAATAGACTTTGAGTTTTTGGGGAACATTAGAGGCAAAGACTGGAGGATTCAGACCAATATTTATGGTAATGGAAGTACCAGCATTGGCAGAGAAGAAAGATATGGTCTCTGGTTTGATCCTGCAGAAGATTTTCATCAATACAGCATTCTCTGGACAGATTCTCAGATCATATTCTATGTGGATAATGTTCCCATCAGAGAAATTAAGAGAACAGAATCCATGGGTGGAGATTTCCCCTCTAAGCCAATGACTCTGTATGCAACAATATGGGATGCATCTGATTGGGCTACCAATGGAGGAAAATACAGAGTAAATTACAAGTATGCACCCTATGTTGCTAAATTCTCTGACCTTGTCTTGCATGGTTGTGCAGTAGATCCCATTGAGCACGCAGCGAAGTGTGACAAATCTCAAAGTTCTGGAGCAGTTCCTTCTGGCGTCACAACTTCACAAAGAATCAAAATGGAGAACTTCAGGAAGAAGCACATGACATACTCTTACTGTTATGACAAAACCAGATACAAAGCCCCTCCGTCAGAGTGTGTGATCAATCCCAAAGAGGCGGAAAGGCTAAGAAGATTTGATCCTGTCACATTCGGTAGTGGTCGACATCACCGAGGTAAACGACACCATCACAGTAGAGGAAACCAGGGAGAAGCAGCAGCATTTTAA 1002 0.4251 MTGSLMGLLLLLFCSMLSVLASGSSRNLPIMAFDEGYTPLFGDNNLVIHSDGKLVHLSLDERTGSGFVSHDLYLHGYFSASIKLPADYTAGVVVAFYMSNGDMFQNNHDEIDFEFLGNIRGKDWRIQTNIYGNGSTSIGREERYGLWFDPAEDFHQYSILWTDSQIIFYVDNVPIREIKRTESMGGDFPSKPMTLYATIWDASDWATNGGKYRVNYKYAPYVAKFSDLVLHGCAVDPIEHAAKCDKSQSSGAVPSGVTTSQRIKMENFRKKHMTYSYCYDKTRYKAPPSECVINPKEAERLRRFDPVTFGSGRHHRGKRHHHSRGNQGEAAAF* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1133 333 MobiDBLite consensus disorder prediction 308 333 - -
Lja4g1133 333 SUPERFAMILY Concanavalin A-like lectins/glucanases 32 295 IPR013320 -
Lja4g1133 333 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 255 291 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lja4g1133 333 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 27-RELATED 9 312 - -
Lja4g1133 333 Pfam Glycosyl hydrolases family 16 36 217 IPR000757 GO:0004553|GO:0005975
Lja4g1133 333 Gene3D - 19 291 - -
Lja4g1133 333 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 23 225 IPR000757 GO:0004553|GO:0005975
Lja4g1133 333 CDD GH16_XET 32 291 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lja4g1133 333 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 9 312 IPR044791 GO:0004553
Lja4g1133 333 PIRSF EndGlu_transf 1 296 IPR016455 GO:0010411|GO:0016762|GO:0042546
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1133 Lja-Chr4 9994601 9997904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1133 6 330 Glycoside Hydrolase AT1G14720 67.674 4.98e-170 474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1133 4 9994601 9997904 Lja4g1133 4 9994601 9997904 ECH