Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1131 ATGATTGGAAGTAAAGATCTTCCTCATGGTGGTGTTGACTCAGAGGGTGAGAACTCCAGAAACAACCTCTCAAGACACAATTTTGAGCCTAGAAAGGACTACCCAGATGAAAAACTAGGATACCCAGAAAACAAAGGTGTTGAATTTCTCAGAGATTCAATGATGGGTAGTGGTGGTGGTGGTGGAAGCTCAGGGTTTCAAGAACTCACCCTCAGCTACCTTTGTGATAGCTCCAAATTGAATCTTGCTGATCCTGGTGGTAAAAGCTTGCTGAATTCCTTGACACACAAAGGTAAAGAGGTTGTTGTTTCTGAGGTTGCAAATCAAGATGGGAAATGGGTGGAGAGAGATTTTCTTAGCTTGAGTGAAACCAGAGAGGATTCATCAAAGCGATCTCTTGAGGAAGATGATGTTGAGAGGGGGAGTAACAGGGAGAAGAAGCCAAAAATGGAGACACTGAATCTATCTCTTGCTTTGCCTGATGTGTCACTTTCTCTCACAGCTTCAAACGCCTTGCAGAACATTGATCATCACCAACAACAACAACAACCTGTGAGGACTGTGCCTAATAGGCCATCAACTACACATACTTCTTATTCAAATGATTACACTGCAGCTTCTTTGTCTTACTCTTATTCCCACCAATTCTCACACAACCCAAGTTGCTCTCTCACCCGCAATTCAACTGAGAATTTTGAGTATTCAATGAGCAAAGATGACCAAATTTGGAATTGTGGGGAAGGGACTAATGGGTCTGTTCATAGCAGGTTCAAGCCAGTAGGAGATGGGGTTGGTTTCTCCAATCATGGTGGTGGTGTTCTCAGTTCTTTCATGCAAGGTAATAGTCAGTATAAAACTAATAGTTCAGATACTCATTCTTTTTTCCCTTCAGAATTGCCTGCAAGACCAAGATTTGAAGCTCAGTCAGGGGATTCAAGGGGGAGGAATTCTGAGAATCTGAGAGTCTTGGAAAGCTTAGATGGTGGGAAGATGAGGAAAATTTCTAGACCTGAGAGAATTGTGAGGGAAATTGTTTCAGAGTCTATACCAGTCATGGCATTGACAATTCCTGAGCTTACTGATGATGTCATAGCATCAACAAAGGAATACTTGAAGAATCTCATTGAGAAGCCTGAGAAGAAAGATGAATTGGTTAGCCTTCAAAACAGGCTTGAGAGAAGATCTGATCTTACCAAGGAGACTCTTACAAAGTGTAGTAAATTGCAATTGGAGATTTTAGTCACTGTGAAGATGGGGTTGACAAGCTTCTTATCTGGAAAAGTTCATTTGTCTGAGATGGTGGAGATTTTCTTGTATAGGAGATGTAGAAATGTGACCTGCAAGCACTTGCTTCCTGTTGATGACTGTGACTGCAAGATTTGCTCAGGGAACAAAGGGTTTTGCAGCTCTTGCATGTGTCCTGTTTGTTTGAACTTTGATTGTGCAAGCAACACTTGTAGTTGGATTGGTTGTGATGTTTGTTCTCACTGGTGCCATGCTGCTTGTGGTATTCAGAGGAACCTCATCAAGCCTGGGCCTAGCTTGAAGGGGCCTTCAGGGACCACAGAGATGCAGTTTCATTGTATTGGCTGTGGACATGCCTCGGAAATGTTCGGGTTTGTTAAAGATGTGTTCTTGTGTTGTGCAAAGGATTGGGGGCTTGAAACCTTGATGAAAGAGTTTGACTATGTGAGGAGGATTTTCAGGGGAAGCGAAGATCGCAAAGGGAAGGAATTACATTATAAAACTGATGACATGCTGTTAAAGCTTCAAACTAAAATGGTGTCTCCTTCAGATGCCTCCAACTACATCATTCAATTTTTCAGCTATGCGGACAGCATGCCGAATTTTCCCGCTTCTGGTATTTCCTCAAAGGATTTGACAGCCTCTCAAGCTAACCTTCCAAAGGACACACCATCTCTTTCAAAATCTAACTCTCTAGTACCAAGCTACGCTTATGACTTGAGCTATTCGAGGTCACATTCTGATGCCGTGACCAATGATCTTCATCAGAAAGACCTCAAAGCTTCCCTATTAAGTGAAGCAAAAAGTGATGCCGATATCCAATTGGCGGCCTTATTGAGAAGAGGCGGTGTTGAGAATTTGGAGAGCATCGTGCGGATAAAGGAGGCCGAAGCCAAAATGTTCCAAACCAAGGCGGACGAAGCAAGGAGAGAGGCAGAAGGGTTCCAGAAGATGATCAGGACAAAGACTGCACAGATGGAGGATGAGTATGCTGCAAAGCTTGGTAAACTCTGTTTGCACGATACTGAGGAAACGCAGAGGAAGAAACTGGATGAGGTGAAAGTCTTGGAGAGTTCCTATGTTGATTATTATAAAATGAAAAAGAGAATGCAAGATGAGATTGACGGTTTGTTGCAGAGAATGGAGGCAACAAAGCAGCAATGGGTTTGA 2415 0.429 MIGSKDLPHGGVDSEGENSRNNLSRHNFEPRKDYPDEKLGYPENKGVEFLRDSMMGSGGGGGSSGFQELTLSYLCDSSKLNLADPGGKSLLNSLTHKGKEVVVSEVANQDGKWVERDFLSLSETREDSSKRSLEEDDVERGSNREKKPKMETLNLSLALPDVSLSLTASNALQNIDHHQQQQQPVRTVPNRPSTTHTSYSNDYTAASLSYSYSHQFSHNPSCSLTRNSTENFEYSMSKDDQIWNCGEGTNGSVHSRFKPVGDGVGFSNHGGGVLSSFMQGNSQYKTNSSDTHSFFPSELPARPRFEAQSGDSRGRNSENLRVLESLDGGKMRKISRPERIVREIVSESIPVMALTIPELTDDVIASTKEYLKNLIEKPEKKDELVSLQNRLERRSDLTKETLTKCSKLQLEILVTVKMGLTSFLSGKVHLSEMVEIFLYRRCRNVTCKHLLPVDDCDCKICSGNKGFCSSCMCPVCLNFDCASNTCSWIGCDVCSHWCHAACGIQRNLIKPGPSLKGPSGTTEMQFHCIGCGHASEMFGFVKDVFLCCAKDWGLETLMKEFDYVRRIFRGSEDRKGKELHYKTDDMLLKLQTKMVSPSDASNYIIQFFSYADSMPNFPASGISSKDLTASQANLPKDTPSLSKSNSLVPSYAYDLSYSRSHSDAVTNDLHQKDLKASLLSEAKSDADIQLAALLRRGGVENLESIVRIKEAEAKMFQTKADEARREAEGFQKMIRTKTAQMEDEYAAKLGKLCLHDTEETQRKKLDEVKVLESSYVDYYKMKKRMQDEIDGLLQRMEATKQQWV* 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1131 804 Pfam Coiled-coil region of Oberon 666 793 IPR032535 -
Lja4g1131 804 MobiDBLite consensus disorder prediction 19 44 - -
Lja4g1131 804 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 433 454 IPR004082 -
Lja4g1131 804 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 479 499 IPR004082 -
Lja4g1131 804 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 700 720 IPR004082 -
Lja4g1131 804 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 552 571 IPR004082 -
Lja4g1131 804 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 394 409 IPR004082 -
Lja4g1131 804 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 355 377 IPR004082 -
Lja4g1131 804 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 739 761 IPR004082 -
Lja4g1131 804 Pfam PHD - plant homeodomain finger protein 442 565 IPR032881 -
Lja4g1131 804 Coils Coil 706 740 - -
Lja4g1131 804 PANTHER PROTEIN OBERON 3 1 804 - -
Lja4g1131 804 MobiDBLite consensus disorder prediction 124 151 - -
Lja4g1131 804 MobiDBLite consensus disorder prediction 177 200 - -
Lja4g1131 804 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 1 804 IPR004082 -
Lja4g1131 804 MobiDBLite consensus disorder prediction 281 295 - -
Lja4g1131 804 CDD PHD_OBE1_like 472 531 - -
Lja4g1131 804 Coils Coil 782 802 - -
Lja4g1131 804 MobiDBLite consensus disorder prediction 281 320 - -
Lja4g1131 804 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1131 Lja-Chr4 9976091 9979934 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1131 442 591 PHD Gene Family AT5G57380 24.000 3.78e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1131 4 9976091 9979934 Lja4g1131 4 9976091 9979934 ECH