Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g1130 ATGGTGACTCCAAACTTGAACTTGGAACCTGAAAATCATTCAGAAGGCTCAAGTGCATCCTTGCAAGAACCATCCCATGATCTTACCATGGACAGTGCTACTACTTCTTCTAGTCTCACAAAGGCTGAACCTGATCCAAATTCTGTTACCCTTGACTTAACACTCAAATTCAGCCACAATGAAGGTGAGTTGAAGGATTCAAGTGATGCAACCAATGAAATTGGAGCTGAAGCTCATGCTACGCCATCAGCAACTCCAAGAACTTTCTCTTGTAATTACTGCAGGCGAAAATTCTTCAGCTCACAAGCGCTGGGGGGTCACCAGAATGCTCACAAAAGGGAGAGGACGATGGCGAAGCGGGCGATGCGAATGGGGATGTTCACTGAAAGGTATGCTAGCTTGGCATCTCTACCTCTCCATGGTTCGCCTTTTCGATCTCTCGGTATCGAAGCTCATGCTGCAATGCACCAGAGACACATGCCGTCGTCATCATCTCTGAGGGCTCCTGATATGAGAGCTGGTGCAAAATTTGAGAGAAACCACCATTTTGGATCACTGGTTTCCATGGAAGATGATGATCTTGGATATTTTTGGCCTGGAAGTTTCAGACAGGTGGATCGGGGAGGTGGTGTTAAACTCGGACAATCTCATAGTTCTAATGGTAGTTTTGTTCCAATGGCACCTCCATCACAACAAGCATCTACATCACCTGATCTCACATTAAAGCTATAA 732 0.4577 MVTPNLNLEPENHSEGSSASLQEPSHDLTMDSATTSSSLTKAEPDPNSVTLDLTLKFSHNEGELKDSSDATNEIGAEAHATPSATPRTFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYASLASLPLHGSPFRSLGIEAHAAMHQRHMPSSSSLRAPDMRAGAKFERNHHFGSLVSMEDDDLGYFWPGSFRQVDRGGGVKLGQSHSSNGSFVPMAPPSQQASTSPDLTLKL* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g1130 243 Gene3D Classic Zinc Finger 65 135 - -
Lja4g1130 243 SUPERFAMILY beta-beta-alpha zinc fingers 87 117 IPR036236 -
Lja4g1130 243 MobiDBLite consensus disorder prediction 208 243 - -
Lja4g1130 243 MobiDBLite consensus disorder prediction 1 47 - -
Lja4g1130 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 116 IPR013087 -
Lja4g1130 243 PANTHER ZINC FINGER PROTEIN JAGGED 11 243 IPR045320 GO:0003700
Lja4g1130 243 MobiDBLite consensus disorder prediction 213 243 - -
Lja4g1130 243 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
Lja4g1130 243 PANTHER ZINC FINGER PROTEIN 3-RELATED 11 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g1130 Lja-Chr4 9968415 9971928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g1130 82 243 C2H2 Transcription Factor Family AT1G66140 44.149 6.04e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja4g1130 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g1130 4 9968415 9971928 Lja4g1130 4 9968415 9971928 ECH