Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0114 ATGGAGAGAGATTTCATGGGTCTGAGCTCCAAAGAACCACTCTCTGTCATCAAGGAAGAAATCAAAAATGATGGGTGGATAGACTCAGGTTTCACGAAGGGTTCGGTTGCACAATGGCCCTTCACGAACAAAGTGTCTGCTTTTCCCCATGTGATGTCTTTCAAGGTTTCTCAAGATGAAAGGACTAAAAGGATGGTGTCTGAACCCCAGAAATCTCTCAATCTCAACGAGCAAGGCGGCATTCATTTTTCACTGGCGCCGCATCCGGTACAACATGATGGGAAGATGTTTTCAGTTTCCAATCAAGCAATTTCTGCCCCCTTGGGAAACCCATTCCAGAAGAATCATTTTGCCGCTGCTGGTCAGAATATGAACGGTGCTAATGTAAAACTGCCACTTCTCGGGGGAAAACCTGTTACCGCACCTCATTCATCTCTTCCCACCATTGGTGCTGTTGCTGGAATGTCTGAATCATGTAACAGTCTGAAAACATCTGCGCCTTCTGCCCCACTTACCATCTTCTATGCGGGTACTGTCAATGTCTTTGATGATATCTCTGCCGAGAAGGCACAAGCAATCATGTTGTTGGCGGCTGGCAATGTCTTATTCGGGGCTTCTAGCACGGCACAGCAAAAAGTTCAGGCACCGAGCTCTAAGTTGGCTGGTGGTGATGTCTGTCCGCCTGCAAATACACCACCCTGCTCTGGTCTTTCAAGTCCTTTGTCTGTTTCGTCCCCTACCGGTGCACATTCAGGGAGTGGCTCAACTAGCACTGATGAATTTCTGGCAGCGAAAACAACTGGAGTTCCTACTGCTCCTGTTAGCATTGTGGAGCCGCGAAAAGCAGTCACCGCGGCCACTATGTTAACATCAGCGGTGCCTCAAGCTCGGAAAGCATCCTTGGCTCGATTTTTAGAAAAGCGCAAGGAAAGTGCACTGTATACCCCTCCGTCAGTCAGGCTTTCTCAGGAGAGGTTCCTGAGTGGATTGGAGAGATGA 999 0.4865 MERDFMGLSSKEPLSVIKEEIKNDGWIDSGFTKGSVAQWPFTNKVSAFPHVMSFKVSQDERTKRMVSEPQKSLNLNEQGGIHFSLAPHPVQHDGKMFSVSNQAISAPLGNPFQKNHFAAAGQNMNGANVKLPLLGGKPVTAPHSSLPTIGAVAGMSESCNSLKTSAPSAPLTIFYAGTVNVFDDISAEKAQAIMLLAAGNVLFGASSTAQQKVQAPSSKLAGGDVCPPANTPPCSGLSSPLSVSSPTGAHSGSGSTSTDEFLAAKTTGVPTAPVSIVEPRKAVTAATMLTSAVPQARKASLARFLEKRKESALYTPPSVRLSQERFLSGLER* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0114 332 Pfam tify domain 166 198 IPR010399 -
Lja4g0114 332 MobiDBLite consensus disorder prediction 231 259 - -
Lja4g0114 332 Pfam Jas motif 294 310 IPR018467 -
Lja4g0114 332 PANTHER PROTEIN TIFY 7 16 310 - -
Lja4g0114 332 MobiDBLite consensus disorder prediction 235 259 - -
Lja4g0114 332 Coils Coil 327 332 - -
Lja4g0114 332 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 16 310 IPR040390 -
Lja4g0114 332 SMART tify_2 164 199 IPR010399 -
Lja4g0114 332 ProSiteProfiles Tify domain profile. 164 199 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0114 Lja-Chr4 884612 888058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0114 38 310 Tify Gene Family AT3G17860 36.577 2.31e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Lja4g0114 tify 3.9e-17 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0114 4 884612 888058 Lja4g0114 4 884612 888058 ECH