Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0113 ATGGGTGACATGAAAGACAAAGTCAAGGGGTTCATGAAGAAAGTCAACAACCCCTTCACCTCTTCATCATCTGGCAAATTCAAGGGTCAAGGTAGGGTTTTGGGATCTTCATCATCATCTTCTTCTTCTTCTGCACCCATCAATCCCAATCGCAATCCCACTCCTCGCCTCACTCCCACCCAGAACCCTAATCCCAATTCCAAACCCCGTCCAGCTTCAACTACCAATCACGAACCCTCGCCGCAGAAAACCAATCGCAATCCGGGTGACGGGTTTGACCCGTTTGATTCCCTCGTCACTTCATCCAACAGATCGCAAAATGGGTACTCGCTGAACGTGTATGAATGCCCCATTTGTAAACAACCGTTCCGATCCGAAGAGGAAGTTTCTGAGCATGTTGATACTTGTTTGAGCACCCCAGCTGAGGGTGATTGTGAAAAGGGTGTCTCAGAATTGGCATTGACTGAAGCTGAGTCTCAAAACAGTGAATTGGAGGTTTGTGTTGGCACTTTCCTTTCAGGGAACCCATCTGAGGGGTCACTTGATGTTGTTCTTAAATTGCTGAGGAATATTGCTAGGGAACCTGAGAATGTTAAGTTTAGGAAGATTAGGATGAGCAATCCAAAGATCAAAGAGGCTGTTGCTGAGGTTACAGGGGGTATTGAGTTGCTGAGCTTTCTAGGATTTGAGCTGAGGGAGGAGAATGGGGATACATGGGCAGTGATGGAGGTTCCTACAGAGGAGCAAATAAAAGTGATTAAGAAAGCTCTAGTGTTGCTGGAACCACCACTGGTGGAACAACCTTCAAAGAGGGACAATTTGGTGACTTCAACTTCTGCTGAGAAAGATGTTAAGGCTGAACCAAAGAAGGTTGACAGACAGGTGAAGGTCTTCTTTGCTGTCCCTGAAAGCGTTGCAGCTAAAATTGAGCTACCAGATTCCTTCTATAAACTTTCAGCTGAAGAGGTAAGAAGAGAAGCTGAATTAAGGAGAAAAAAGCTTGAAGAGTCCCAGCTTTTAATCCCTAAGTCACTTAGAGAAAAGCAAGCTAAAGCTGCCAGGAGGAGATACACAAAAACTATTATTCGGATTCAGTTTCCGGATGGAGTTGTACTTCAAGGTGTATTTTCTCCATGGGAACCAACCACTGCTCTCTATGAGTTTGTGAGCTCCGCATTAAAAGAACAAGCTTTGGAGTTTGAGCTAATGCATCCTGTGGTTATCAAACGGAGGGTGATCCCTCATTTTCCTAAAGCAGGGGAAAATGCTAAAACAATAGAGGAAGAGGACCTGGTACCTTCTGCTCTAATCAAGTTCAAGCCCCTGGAAACAGATTCTGTGGTTTTCACCGGTCTCAGAAATGAATTGCTTGAAATCAGTGAACCACTTGTAAATAGTTAA 1401 0.4468 MGDMKDKVKGFMKKVNNPFTSSSSGKFKGQGRVLGSSSSSSSSSAPINPNRNPTPRLTPTQNPNPNSKPRPASTTNHEPSPQKTNRNPGDGFDPFDSLVTSSNRSQNGYSLNVYECPICKQPFRSEEEVSEHVDTCLSTPAEGDCEKGVSELALTEAESQNSELEVCVGTFLSGNPSEGSLDVVLKLLRNIAREPENVKFRKIRMSNPKIKEAVAEVTGGIELLSFLGFELREENGDTWAVMEVPTEEQIKVIKKALVLLEPPLVEQPSKRDNLVTSTSAEKDVKAEPKKVDRQVKVFFAVPESVAAKIELPDSFYKLSAEEVRREAELRRKKLEESQLLIPKSLREKQAKAARRRYTKTIIRIQFPDGVVLQGVFSPWEPTTALYEFVSSALKEQALEFELMHPVVIKRRVIPHFPKAGENAKTIEEEDLVPSALIKFKPLETDSVVFTGLRNELLEISEPLVNS* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0113 466 SUPERFAMILY PUG domain-like 177 256 IPR036339 -
Lja4g0113 466 MobiDBLite consensus disorder prediction 67 87 - -
Lja4g0113 466 Gene3D - 349 442 - -
Lja4g0113 466 Gene3D Classic Zinc Finger 110 141 - -
Lja4g0113 466 SMART PGNneu 179 246 - -
Lja4g0113 466 CDD PUB 177 261 - -
Lja4g0113 466 MobiDBLite consensus disorder prediction 52 66 - -
Lja4g0113 466 ProSiteProfiles UBX domain profile. 355 439 IPR001012 GO:0005515
Lja4g0113 466 Pfam UBX domain 357 406 IPR001012 GO:0005515
Lja4g0113 466 Pfam PUB domain 178 254 IPR018997 -
Lja4g0113 466 Gene3D - 174 261 - -
Lja4g0113 466 SUPERFAMILY Ubiquitin-like 326 439 IPR029071 -
Lja4g0113 466 Coils Coil 317 337 - -
Lja4g0113 466 MobiDBLite consensus disorder prediction 15 51 - -
Lja4g0113 466 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 2 1 465 - -
Lja4g0113 466 MobiDBLite consensus disorder prediction 1 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0113 Lja-Chr4 877406 880572 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0113 1 387 C2H2 Transcription Factor Family AT2G01650 56.642 2.12e-147 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja4g0113 UBX 6.3e-06 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0113 4 877406 880572 Lja4g0113 4 877406 880572 ECH