Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0110 ATGGGCTCCGAAGGATCCAGTGTCGTCGTTCCTAGGAGTTTCAGATTATTGGAAGAGCTTGAGCGAGGTGAGAAGGGAATTGGAGATGGAACTGTAAGCTATGGAATGGACGACGCTGATGATATATACATGCAGTCATGGACTGGAACAATTATCGGCCCCCCTGGTACTGTTCATGAAGGTCGTATCTATCAGTTGAAACTGTTTTGTGGCAAGGACTATCCAGATAATCCACCATCAGTTAGATTTCAGACAAGGATTAACATCACTTGTGTCAACCAAGAAACTGGAGCTGTTGATCCACATTCATTTCCCATGCTTGCTAATTGGCAAAGAGAGTGTACAATGGAAGACATTTTGATGCAATTGAAGAAAGAAATGATGTCTCCACAAAACCGGAAGCTAGCCCAACCAGCTGAAGGCAACGAAGATGGCAGGATTGAACAAAAGGGGCTGGTCCTGAGATGTTGTGTCATGTAA 480 0.4437 MGSEGSSVVVPRSFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTIIGPPGTVHEGRIYQLKLFCGKDYPDNPPSVRFQTRINITCVNQETGAVDPHSFPMLANWQRECTMEDILMQLKKEMMSPQNRKLAQPAEGNEDGRIEQKGLVLRCCVM* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0110 159 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 8 144 - -
Lja4g0110 159 Gene3D Ubiquitin Conjugating Enzyme 2 144 IPR016135 -
Lja4g0110 159 Pfam Ubiquitin-conjugating enzyme 41 137 IPR000608 -
Lja4g0110 159 SMART ubc_7 14 158 - -
Lja4g0110 159 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 1A-LIKE 8 144 - -
Lja4g0110 159 SUPERFAMILY UBC-like 9 141 IPR016135 -
Lja4g0110 159 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 11 159 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0110 Lja-Chr4 843339 847379 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0110 4 843339 847379 Lja4g0110 4 843339 847379 ECH