Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0102 ATGGCTACATCGAAGATGGTCATGTCTTCGCTGACCCACTTGCGTCCACTAACCTGCGCCGCCTCCGCATCACGAATAGTGTCTCATCCACCTGACCTTATCAACTGGGTTACCAGAGAAGGTGGCTTCGTGCACCGTGCGGTGAAGATAGCTCAGCTTGGCTCCAATGGTTTAGGACTAGTTGCTAAGCAAGAAATTCCAATGGGCAGTGAGCTTATTGTTCTTCCTCACCATATTCCTCTGCAGTTTCCCTCTCTTGATGTCAACCCTCATGACTCTGCATTGCTTCAACTGGTTCACCATGTTCCTGAGGAACTGTGGGCGTTAAAACTGGGTTTGAAGCTTCTGCAAGAAAGAGCAAAAGTTGGATCCTATTGGTGGCCATACATCAGCAATCTCCCGATAACATACAGTGTGCCTATCTTCTTTCCTGGGGAAGACATCAAGAACCTGCAGTATGGTCCTCTTCTTCACCAGGTAAACAAAAGATGCAGGTTTCTTCTTGAGTTTGAGCAAGAAGTCAAGCGTGCCTTAGCCAGTCTTACACCAGATAAGCATCCTTTTGGTGGCCTAGAAGTAGATGCACCTTCTCTTGGATGGGCGATGTCAGCAGTCTCATCTAGAGCATTCCGGCTGCATGGTAACAAGGATCCAAATGGAACACACGTTGACATACCCATGATGCTCCCTCTGATTGACATGTGTAATCATAGTTTCAATCCAAATGCTAAGATTATTCAGGAACAAGATAGCAGTAGCACAAAGATGCAAGTGAAGGTTGTGGCCAAGACAACTATCAAAGAAGATGATCCTTTATTACTTTGCTATGGCAATTTAAGCAATGATCTTTTCCTTCTCGACTATGGATTTGTGATGCACTCAAACCCTTATGACTATATTGAGCTCAAATATGATGGTGCTTTTTTGGATGCTGCAAGCACGGCTGCTGGAGTTTCTTCACCAAACTTCTCGACACCTGCTCCCTGGCAGGAACACATTTTATCTCAGCTAAACCTAGCGGGAGAAGCTCCAGATCTCAAGGTGAGCTTAGGTGGTCAGGAAATAATAGAGGGGCGCTTGTTGGCTGCATTAAGGGCCCTCCGTGCAAGTGATGCGGAAACTGTGCAAAAGCATGACCTCAACACTCTCAAGTCTTTACATGCTGAGGCTCCTCTTGGTGTTGCAAATGACATTGCTGTATTTCGCACCCTCATTGCTCTGTGTGTCATTGCACTGGGACACTTTCCCACCCAAATAGCAGATGATGAATCACTGTTGAAGCAGGGCGCTCCAGGTTCAACTGAGTTAGCCATTCAGTTCAGAATGCAAAAGAAATCTGTGATTATAGATGTTGTGAGAGATCTCTCAAGGAGGGTAAAGCTTCTCTCATCAAAGGAAACAGTGACCGCCGAGGGCTAA 1419 0.4616 MATSKMVMSSLTHLRPLTCAASASRIVSHPPDLINWVTREGGFVHRAVKIAQLGSNGLGLVAKQEIPMGSELIVLPHHIPLQFPSLDVNPHDSALLQLVHHVPEELWALKLGLKLLQERAKVGSYWWPYISNLPITYSVPIFFPGEDIKNLQYGPLLHQVNKRCRFLLEFEQEVKRALASLTPDKHPFGGLEVDAPSLGWAMSAVSSRAFRLHGNKDPNGTHVDIPMMLPLIDMCNHSFNPNAKIIQEQDSSSTKMQVKVVAKTTIKEDDPLLLCYGNLSNDLFLLDYGFVMHSNPYDYIELKYDGAFLDAASTAAGVSSPNFSTPAPWQEHILSQLNLAGEAPDLKVSLGGQEIIEGRLLAALRALRASDAETVQKHDLNTLKSLHAEAPLGVANDIAVFRTLIALCVIALGHFPTQIADDESLLKQGAPGSTELAIQFRMQKKSVIIDVVRDLSRRVKLLSSKETVTAEG* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0102 472 SUPERFAMILY SET domain 31 295 IPR046341 -
Lja4g0102 472 CDD SET_LSMT 47 291 - -
Lja4g0102 472 Pfam SET domain 57 277 IPR001214 GO:0005515
Lja4g0102 472 Gene3D - 324 466 IPR036464 -
Lja4g0102 472 SMART set_7 46 283 IPR001214 GO:0005515
Lja4g0102 472 Pfam Rubisco LSMT substrate-binding 326 447 IPR015353 -
Lja4g0102 472 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 287 466 IPR036464 -
Lja4g0102 472 PANTHER F21J9.27 5 469 - -
Lja4g0102 472 Gene3D set domain protein methyltransferase, domain 1 3 290 - -
Lja4g0102 472 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 5 469 - -
Lja4g0102 472 ProSiteProfiles SET domain profile. 46 277 IPR001214 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0102 108 271 NAC Transcription Factor Family AT3G56570 30.000 8.77e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lja4g0102 SET 6.3e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0102 4 767657 771163 Lja4g0102 4 767657 771163 ECH