Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0100 ATGGAGTCGAAGGCTCTACGTTTCATAACCCACCAATCAATTTTCTCCATAGTTGGATCTGGGGACTTTGATGGGTTGAAGAAAGTGGTGGAGCAGCTGAAAAACGACGATGGTGGTGGTGATGGGTCATCATCATCATCATCATCATCGTCGCTTTCTGAAGTGATGTCCCTTCAGAACGATGCTGGAGAGACCGCACTTTACATCGCTGCAGAGCGTAATCTGAAGGAGGTGTTCAGCTTCTTGCTCAAGTTGTGTGACTATGAGGTTGTTAAGATTCGGTCCAGGTCTGATATGAACGCGTTTCATGTTGCAGCCAAGCGTGGCCATCTGGATATCGTGAGGGAGCTTTTGAGTACTTGGCCTGAGGTTTGTAAGCTATGTGATTCCACGAACACAAGCCCTCTATATGCTGCTGCAGGTCAAGACCACTTGGATGTGGTGAATGCTATTTTGGATGTTGATGTCAGTTCCATGTTTATAGTTAGGAAAAATGGCAAAACTTCATTACACAATGCTGCTAGGTATGATGTCCTTCGTATAGTGAAAGCACTTATTGCCCGGGATCCTGGAATAGTTTGCATCAAAGATAAAAAGGGTCAAACTGCACTGCACATGGCTGTCAAAGGACAGAGTACATTAGTGGTGGAGGAGATTTTACTAGCTGATCCTACTATATTGAATGAACGAGATAAGAAGGGTAATACAGCTCTTCACATGGCGACAAGGAAAGGCCGTTCACAGATAGTGAACCTTTTGCTAATCTATACAGCTACGGACATTAATGCCATCAATAAGCAACAAGAAACAGCCTTGGATTTGGCAGATAAACTTCCATATGGAGATTCAGCTTTAGAAATCAAGGAAGCCCTTTCAGAATATGGTGCTAAGTATGCCAGGCATGTTGGCAAAGTAGATGAAGCCATGGAACTTAAAAGAACAGTGAGTGATATAAAGCATGAGGTGCAGTCACAGCTTATACAAAATGAAAAAACTCGCAAACGAGTCTCCGGCATCGCTAAAGAACTGAAGAAACTTCACAGAGAAGCAGTTCAAAACACCATTAATTCCGTCACAGTTGTTGCTGTCCTTTTTGCCTCTATAGCATTCTTGGCTATATTCAATTTGCCTGGTCAATATATAATGACAGGATCAGAGACAGGGAAGGCGAATATAGCGGATCATGTTGGATTCCAAGTTTTTTGCTTCTTGAATTCAACATCCCTCTTCATTTCTCTTGCAGTTGTTGTGGTTCAGATCACTTTGGTAGCATGGGACACTAGAGCCCAAAAGCAGATTGTGTCAGTGGTTAACAAGCTCATGTGGGCTGCATGTGCTTGCACTTGTGGTGCTTTTCTTGCAGTAGCTTTTGAAGTTGTTGGAAAGAAAACATGGATGGCTATTACCATCACCATTTTGGGAGTGCCAATTCTTTTGGGGACTCTAGCAATCTTGTGCTACTTTGTGTTTCGCCAACATTTTGGGATTTTTCGCAGCGATTCGCAGAGGCGGATCAAGAGAGCAAGTGGAAGCAAATCTTTCTCATGGTCTTACTCTGCACATATCTCAGATTTGGATGATGAATATAATTCTGACATTGAGAAGATCTATGCTCTATGA 1620 0.4284 MESKALRFITHQSIFSIVGSGDFDGLKKVVEQLKNDDGGGDGSSSSSSSSSLSEVMSLQNDAGETALYIAAERNLKEVFSFLLKLCDYEVVKIRSRSDMNAFHVAAKRGHLDIVRELLSTWPEVCKLCDSTNTSPLYAAAGQDHLDVVNAILDVDVSSMFIVRKNGKTSLHNAARYDVLRIVKALIARDPGIVCIKDKKGQTALHMAVKGQSTLVVEEILLADPTILNERDKKGNTALHMATRKGRSQIVNLLLIYTATDINAINKQQETALDLADKLPYGDSALEIKEALSEYGAKYARHVGKVDEAMELKRTVSDIKHEVQSQLIQNEKTRKRVSGIAKELKKLHREAVQNTINSVTVVAVLFASIAFLAIFNLPGQYIMTGSETGKANIADHVGFQVFCFLNSTSLFISLAVVVVQITLVAWDTRAQKQIVSVVNKLMWAACACTCGAFLAVAFEVVGKKTWMAITITILGVPILLGTLAILCYFVFRQHFGIFRSDSQRRIKRASGSKSFSWSYSAHISDLDDEYNSDIEKIYAL* 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0100 539 PANTHER PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 2 539 - -
Lja4g0100 539 Coils Coil 329 349 - -
Lja4g0100 539 Pfam Ankyrin repeats (3 copies) 131 188 IPR002110 GO:0005515
Lja4g0100 539 Pfam Ankyrin repeats (3 copies) 197 263 IPR002110 GO:0005515
Lja4g0100 539 Pfam Ankyrin repeats (3 copies) 60 118 IPR002110 GO:0005515
Lja4g0100 539 Gene3D - 157 318 IPR036770 -
Lja4g0100 539 ProSiteProfiles Ankyrin repeat region circular profile. 233 254 - -
Lja4g0100 539 Gene3D - 43 156 IPR036770 -
Lja4g0100 539 Pfam Domain of unknown function 349 456 IPR026961 -
Lja4g0100 539 ProSiteProfiles Ankyrin repeat profile. 233 266 IPR002110 GO:0005515
Lja4g0100 539 PANTHER ANKYRIN REPEAT PLANT-LIKE PROTEIN 2 539 - -
Lja4g0100 539 SUPERFAMILY Ankyrin repeat 15 295 IPR036770 -
Lja4g0100 539 SMART ANK_2a 199 228 IPR002110 GO:0005515
Lja4g0100 539 SMART ANK_2a 131 161 IPR002110 GO:0005515
Lja4g0100 539 SMART ANK_2a 165 194 IPR002110 GO:0005515
Lja4g0100 539 SMART ANK_2a 62 92 IPR002110 GO:0005515
Lja4g0100 539 SMART ANK_2a 233 263 IPR002110 GO:0005515
Lja4g0100 539 SMART ANK_2a 97 126 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0100 Lja-Chr4 756795 760475 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0100 1 539 Miscellaneous Gene Families AT2G01680 69.188 0.0 741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0100 4 756795 760475 Lja4g0100 4 756795 760475 ECH