Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0098 ATGTCGTGGGAAGACGAGATTGTGATGCGCGATGTCACCAATGCGGGTCTTGTCGTCAGTGATCGCATTGGCCGCGAAGTTTCGTCTCAGCTCGACTTCGAAGAAGCTCTTGAAGCTTCCAGATACGTTAGCCATCCCTATTCCACTCAACCCAGAGAGTGGCCCCCTTTAGTTGAGGTAGTGAATACGTGGGAGTTGCCTCCTGTGCTCATTGAAAGGTACAATGCGGCTGGCGGGGAAGGGACTGCTTTTTGTGGAATATTTCCGGAAATACGTAGGGCATGGGCATCTGTGGACAATTCCTTGTTTCTATGGCGATTTGATAAGTGGGATGGCCAATGTCCTGAATATAGTGGGGAGGAACAAGCTATTTGTGCTGTTGGTCTTGCAAAATCAAAACCTGGTGTTTTTGTTGAAGCTATCCAATATCTTTTAATATTAGCGACACCTGTTGAGTTAATTTTAGTAGGAGTATGCTGCTCTGGAGGAGCAGATGATTCAGATCCATTTGAAGAAGTTTCATTACAGCCATTGCCAGAGTATACAATACCATCTGATGGGGTTACAATGACATGTGTATCATGTACTGATAAGGGCCGCATTTTCCTTGCTGGTCGTGATGGCCACATATATGAGCTTCTTTATTCAACTGGTTCAGGATGGCAAAAGCGATGCAGAAAGATCTGTGTCACTGCTGGTCTAGGAAGTGTAATTTCAAGATGGGTCATACCAAATGTGTTCAACTTTGGAGCCGTTGACCCTATTGTTGAAATGGTTTTTGACAATGAGAGACAAATATTGTATGCACGAACTGAGGAGATGAAGCTTCAGGTTTATGTTCTTGGGCCAAATGGTGATGGTCAATTAAAGAAAGTGGCTGAAGAAAAGAACCTTGTCAATCAGAGGGATGCACAAGGTAGACAATCAACAGGATCAAGGGTCTCAAGTCGATTGCCGAAGCCATCTATTGTTTGCATCTCACCTTTATCTACACTTGAATCCAAGTTGCTACATCTTGTTGCTGTTTTATCAGATGGCAGAAGGATGTACTTATCTACCTCTCCTTCAAGTGGAAGCCTGACTGGATTTAACACCAACCATCATAAGCCTAGCTGTTTAAAGGTTGTCGCGACAAGGCCTGCTCCTCCTTGGGGTGTTAGTGGTGGTCTTACCTTTGGAACCATGGCTCTTGCTGGTAGACCTCAGAATGAGGATCTCTCACTGAAAGTTGACGCAGCCTATTATTCTACTGGAACTCTTATCCTTTCTGATGCATCACCTTCAACTATTCCTTCACTCCTTGTTTTGAACAGGGATTCAAGCACACAGTCATCATCATCAGGTAATCTCGGGACAGGAATGAGGAGTTCCCGGGCATTACGGGAATCTGTATCTTCTTTACCAGTTGAAGGAAGAATGCTTTCTGTGGCAGATGTTTTACCTTTGCCAGATACTGCAGCTACTGTACGGTCTCTATATTCAGAAATTGAGTTTGGTGGTTATGAGAACTCGATGGAATCATGTGAAAGGGCATCTGGCAAACTCTGGTCTAGGGGAGACCTCTCAACTCAACATATATTGCCGAGGAGGAGGATTGTCATCTTCAGCACCATGGGCATGATGGAAATTGTTTTTAACAGGCCACTGGACATTCTAAGGCGACTATTAGAGTCAAATTCTCCAAGATCAGTTTTAGAAGATTTCTTCAATCGTTTTGGTGCTGGCGAGGCAGCTGCAATGTGTCTAATGCTAGCTGCAAGAATAGTGCATTCTGAAAATCTTATTAGCAATGTTATTGCTGAGAAGGCAGCTGAAGCTTTTGAGGACCCAAGAGTTGTTGGCATGCCACAACTTGAAGGGAGCAGTGCATTATCAAACACAAGAACTGCTGCTGGTGGATTTAGCATGGGCCAGGTTGTTCAGGAGGCCGAGCCTGTTTTTTCAGGTGCACATGAAGGACTCTGTTTGTGTTCATCCAGATTACTTTTTCCTCTATGGGAACTTCCTGTGATGGTCGTAAAAGGAAGTTTAGGTCCTTCAGGCACTTTATCAGAGAATGGGGTAGTTGTATGCAGACTCTCTGTTGGGGCTATGCAAGTCCTTGAACTCAAACTTCGATCTTTAGAGAAATTCTTAAGATCTAGAAGGAACCAGAGGAGAGGGCTTTATGGCTGTGTAGCAGGTTTAGGAGATGTGAGTGGTTCCATTCTATATGGTAATGGTTCCGCATTAGGTGCTGGTGATCGAAGTATGGTAAGAAGCCTGTTTGGGGCATATTCAAGAAATATGGAGTCTAATGGTGGTGGAACCACTAATAAAAGGCAAAGGTTGCCATATAGTCCTGCAGAATTAGCTGCCATGGAGGTGAGGGCAATGGAGTGCATTAGGCAGTTACTCCTTAGATCTGGCGAAGCCCTGTTTTTGCTTCAACTTCTTTCTCAGCATCATGTCACTCGTTTGATTCAGGGATTTGATGCTAACCTTCAACATGCATTAGTTCAGCTAACATTCCATCAACTTGTTTGTTCTGAGGAGGGTGACCGTCTTGCTACTAGACTTATATCTGCTCTGATGGAGTATTATACTGGTCCTGATGGCAGGGGAACAGTAGATGACATTAGTAGGAGATTACGAGAGGGTTGTCCAAGCTACTATAAGGAGTCTGATTACAAGTTCTTCTTATCTGTGGAAGCCTTGGAAAGAGCTGCTGTGACTGTGGATGCTGAGGAAAAGGAAAATCTTGCAAGGGAGGCATTAAATTCCTTGAGTAAAGTCCCAGAGTCTGCAGACTTGCGTACTGTTTGCAAACGTTTTGAGGATTTAAGGTTTTATGAAGCAGTAGTGTGCTTACCTCTTCAAAAGGCACAGGCTCTTGACCCTGCAGGTGATGCCTATAATGACGACATTGATGCAACTGTAAGAGAGCAAGCACTTGTTCAGCGTGAGCAGTGCTATGAAGTAATTATCAGTGCTCTACGGTCTCTGAAAGGTGACACCTTGCAGAAGGAATTTGGCTCTCCCATCAGATCTGCTGCATCACAATCTGCTCTTGATCCAGCCTCTCGGAGAAAATACATTAGCCAAATTGTTCAGCTGGGTGTCCAATCACCTGACAGAATATTCCACGAGTATCTCTACCAGGCTATGATTGATTTAGGTCTTGAGAACGAATTATTAGAGTACGGAGGGCCCGACCTGTTGCCGTTTTTACAAAGTGCTGGTCGTAAACCCATACATGAGGTTCGTGCTGTGACTGCGACAACTTCTCCAATAGGGCAATCAGGAGCTCCTTTGTCGTCAAATCAAGTCAAGTACTATGAACTTTTGGCACGGTATTATGTCTTGAAGCGGCAACATATGCTGGCAGCTCATGCATTATTAAGACTCGCTGAAAGGCGCTCTATTGATGGAGTTCCTACTCTTGAACAGAGGTGTCAATACCTAAGTAATGCAGTTCTACAGGCAAAAAATGCAACAAATAATGACGGGTTGGTAGGTTCTACTCGGAGTTCCTTTGATAGTGGATTCCTAGATTTGCTTGAAGGGAAGCTTGCTGTGCTTCGGTTTCAGATAAAAATCAAAGAGGAGTTCGAAGCTATGGCTTCTAGGTCTGAGGGTTTGCAAGGCACACCTGATTCCGTCCAAAATGGTTTAGTCCCCGAGGGAAGTTCAACTGCTGATCCTAATTTTGCAAATGCAATACGAGAGAAAGCTAAAGAGCTATCATCAGATGTAAAAAGCATAACACAGTTATATAATGAATATGCTGTTCCCTTTGAGCTCTGGGAGATATGCCTGGAGATGCTTTACTTTGCCAACTATTCTGGTGAAAATGACAGCAGCATTGTCAGAGAAACATGGGCTAGACTTATAGATCAAGCTATTTCAAGAGGTGGCATTGCTGAAGCTTGCTCTGTATTAAAGAGGGTCGGGCCCCGCATTTATCCGGGTGATGGAGCTGTTTTACCACTTGACATTATTTGTCTTCACCTAGAGAAGGCTGGACTGGAGAGGTTAAATTCAGGGGTTGAACCTGTTGGAGATGAAGATGTTGCAAGAGCCCTTGTTTCTGCTTGTAAGGGTTCAGCTGAACCTGTTCTGAATGCATATGATCAATTGTTATCAAACGGGGCTATTTTGCCATCCCCAAATCTTAGATTGCGTTTATTGAGATCTGTTCTAGTTATACTCCGTGAGTGGGCTACGTCTGTATATTCCCATAGGATGGGTATTGGTGCCTCGCCTTCCCGAGTACTGGAGGGAGGATTCTCATTGGAACGCACAGTTGCTAGCCAAGGAATTCGGGACAAGATCACTAGTGCAGCAAACAGGTATATGACTGAAGTGAGGAGACTTGCCCTTCCACAGAACCAAACAGAAGTTGTGTATCGAGGCTTTAGAGAACTTGAAGAGTCGGTTATTAGTCCTCATTCATTTAATCGATTTTGA 4449 0.4421 MSWEDEIVMRDVTNAGLVVSDRIGREVSSQLDFEEALEASRYVSHPYSTQPREWPPLVEVVNTWELPPVLIERYNAAGGEGTAFCGIFPEIRRAWASVDNSLFLWRFDKWDGQCPEYSGEEQAICAVGLAKSKPGVFVEAIQYLLILATPVELILVGVCCSGGADDSDPFEEVSLQPLPEYTIPSDGVTMTCVSCTDKGRIFLAGRDGHIYELLYSTGSGWQKRCRKICVTAGLGSVISRWVIPNVFNFGAVDPIVEMVFDNERQILYARTEEMKLQVYVLGPNGDGQLKKVAEEKNLVNQRDAQGRQSTGSRVSSRLPKPSIVCISPLSTLESKLLHLVAVLSDGRRMYLSTSPSSGSLTGFNTNHHKPSCLKVVATRPAPPWGVSGGLTFGTMALAGRPQNEDLSLKVDAAYYSTGTLILSDASPSTIPSLLVLNRDSSTQSSSSGNLGTGMRSSRALRESVSSLPVEGRMLSVADVLPLPDTAATVRSLYSEIEFGGYENSMESCERASGKLWSRGDLSTQHILPRRRIVIFSTMGMMEIVFNRPLDILRRLLESNSPRSVLEDFFNRFGAGEAAAMCLMLAARIVHSENLISNVIAEKAAEAFEDPRVVGMPQLEGSSALSNTRTAAGGFSMGQVVQEAEPVFSGAHEGLCLCSSRLLFPLWELPVMVVKGSLGPSGTLSENGVVVCRLSVGAMQVLELKLRSLEKFLRSRRNQRRGLYGCVAGLGDVSGSILYGNGSALGAGDRSMVRSLFGAYSRNMESNGGGTTNKRQRLPYSPAELAAMEVRAMECIRQLLLRSGEALFLLQLLSQHHVTRLIQGFDANLQHALVQLTFHQLVCSEEGDRLATRLISALMEYYTGPDGRGTVDDISRRLREGCPSYYKESDYKFFLSVEALERAAVTVDAEEKENLAREALNSLSKVPESADLRTVCKRFEDLRFYEAVVCLPLQKAQALDPAGDAYNDDIDATVREQALVQREQCYEVIISALRSLKGDTLQKEFGSPIRSAASQSALDPASRRKYISQIVQLGVQSPDRIFHEYLYQAMIDLGLENELLEYGGPDLLPFLQSAGRKPIHEVRAVTATTSPIGQSGAPLSSNQVKYYELLARYYVLKRQHMLAAHALLRLAERRSIDGVPTLEQRCQYLSNAVLQAKNATNNDGLVGSTRSSFDSGFLDLLEGKLAVLRFQIKIKEEFEAMASRSEGLQGTPDSVQNGLVPEGSSTADPNFANAIREKAKELSSDVKSITQLYNEYAVPFELWEICLEMLYFANYSGENDSSIVRETWARLIDQAISRGGIAEACSVLKRVGPRIYPGDGAVLPLDIICLHLEKAGLERLNSGVEPVGDEDVARALVSACKGSAEPVLNAYDQLLSNGAILPSPNLRLRLLRSVLVILREWATSVYSHRMGIGASPSRVLEGGFSLERTVASQGIRDKITSAANRYMTEVRRLALPQNQTEVVYRGFRELEESVISPHSFNRF* 1483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0098 1482 MobiDBLite consensus disorder prediction 298 317 - -
Lja4g0098 1482 Gene3D - 529 881 - -
Lja4g0098 1482 Gene3D - 1179 1435 IPR042538 -
Lja4g0098 1482 PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP155 2 1479 IPR004870 GO:0005643|GO:0006913|GO:0017056
Lja4g0098 1482 Pfam Nup133 N terminal like 54 541 IPR014908 -
Lja4g0098 1482 Gene3D Nucleoporin, helical domain, central subdomain 1055 1152 IPR042537 -
Lja4g0098 1482 PANTHER BNAC05G49530D PROTEIN 2 1479 - -
Lja4g0098 1482 MobiDBLite consensus disorder prediction 440 462 - -
Lja4g0098 1482 Gene3D - 892 1052 IPR042533 -
Lja4g0098 1482 MobiDBLite consensus disorder prediction 302 317 - -
Lja4g0098 1482 Pfam Non-repetitive/WGA-negative nucleoporin C-terminal 872 1290 IPR007187 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0098 Lja-Chr4 724519 734280 Dispersed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0098 4 724519 734280 Lja4g0098 4 724519 734280 ECH