Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0096 ATGGCATCGCCTTACTCCGCCCCTCAGCCCCACGCGCCACTCCTCCGCCCCCGCCGCGATGGCTCCCGACCTCCCATCCTCGCGCTCCTCCTCGGCCGCCGCGGCCCTTCCGTGCTGGTCCGCGAGACAGCAGCGCGTGAGCTGGAGGAGCGGCGTGCCGACTGGGGCTACTCGAAGCCGGTGGTGGCCCTTGACATGGCGTGGAACATGGCCTTTGTGGTGGTCTCCGTGGTGATGCTCGGTTTCACCCTCCAGGAGAATCCTAACACGCCGATCCGGTTGTGGATCTGCGGTTACGCGGTTCAGTGCCTGGTTCACCTCGTGCTGGTGTGGCTCGAGTACAGGAGGAGGAACCGGAGGGGACACGGCATGGAATCTGGTAACAACCTTGACGATGACGTTGACAACAGTGAGGATGATGATGTTGGGGTTGGAAGCTCTGGGAATTCCTCTAGCTATGGATTCGTAAAACGATGTGCATCATTCAATACCATGGTTTCATTGCTTTGGTGGATGGTGGGCTTTTACTGGGTAGTCTGTGGTGGTGATGTTCTTCTGCAAGATGCTCCACGTTTGTACTGGTTGGCTGTTGTCTTTCTGGCATTTGATGTCTTCTTTGCCATCTTTTGTGTTGTTTTGGCATGCTTGATTGGCATTGCCCTCTGCTGTTGTTTGCCATGTATTATTGGTATTCTCTATGCTGTTGCTGGACAGGAGGGTGCATCTGAATCAGATATCGGCGTACTTCCAAAATACAGATTTCAAATGTCAAGCAATGGGGAAACACCTAGTGAAGGAGGTGGATCAATGGTTCCCCTAGAAACCGGCATCGGTTTCCCGGCAAATGAACGAGCACTTTCACCCGAGGATGCGGAGTGCTGTATATGCATCTCTTCTTATGAGGATGGAGCAGAACTTCATTCTCTTCCATGTAACCATCATTTCCATTCTACATGCATAGTGAAGTGGTTAAAGATGAATGCAACTTGTCCTCTTTGCAAGTACAATATTCTTAAGGGAAATGAACAGGTTTAA 1035 0.5208 MASPYSAPQPHAPLLRPRRDGSRPPILALLLGRRGPSVLVRETAARELEERRADWGYSKPVVALDMAWNMAFVVVSVVMLGFTLQENPNTPIRLWICGYAVQCLVHLVLVWLEYRRRNRRGHGMESGNNLDDDVDNSEDDDVGVGSSGNSSSYGFVKRCASFNTMVSLLWWMVGFYWVVCGGDVLLQDAPRLYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIGILYAVAGQEGASESDIGVLPKYRFQMSSNGETPSEGGGSMVPLETGIGFPANERALSPEDAECCICISSYEDGAELHSLPCNHHFHSTCIVKWLKMNATCPLCKYNILKGNEQV* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0096 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 277 342 IPR013083 -
Lja4g0096 344 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
Lja4g0096 344 SMART ring_2 293 333 IPR001841 -
Lja4g0096 344 MobiDBLite consensus disorder prediction 1 20 - -
Lja4g0096 344 MobiDBLite consensus disorder prediction 125 148 - -
Lja4g0096 344 PANTHER TARGET OF ERK KINASE MPK-1 1 344 - -
Lja4g0096 344 Pfam Ring finger domain 292 334 IPR001841 -
Lja4g0096 344 SUPERFAMILY RING/U-box 284 338 - -
Lja4g0096 344 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0096 Lja-Chr4 713379 717278 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0096 1 343 C3H Transcription Factor Family AT1G68070 64.773 2.32e-166 466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0096 4 713379 717278 Lja4g0096 4 713379 717278 ECH