Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0091 ATGGCGATGGCAAAGGAGAATAAGAACAAAAACAAGGAAGATGAAGATGAGCTTCACAATCACAACAGCACAGGGAAGAGGCTCAAATGCATGAGGAAGATGAAGAAGAATGAAGAACAAGACCAAGTTGTTGATGATGATGATGGTGTTGTTGTTGTTGCAGGGGAAGCTGAGGAAAGTGAGCTTCCACTTCAACCAGGACTCTTCTTCTACCCAACAACACCAACCTCTTTTGTTGTGGCTGATGCTCTTGAACCTGATTTTCCCATCATCTATGTCAACAAGGTCTTTGAAACCTCCACTGGGTATCGTGCTGATGAAGCTCTTGGTCGGAACTGTCGGTTCTTACAGTACCGGGATCCTCGAGCTCAGAGGCGGCACCCTTTGGTGGATCCTGTTGTTGTGGCTGAGATTAGAAGATGTCTTGAGGAAGGTATTGAGTTCCAAGGTGAACTTCTGAATTTCAGGAAGGATGGTACTCCTTTAGTGAACAGGCTGAGACTTGCACCAATTCATGATGATGATGGAACTGTGACACATGTAATAGGCATCCAAATATTTTCCGAGGCGAATATAGATCTGAACTGCGTCTCATATCCGGTTTTCAGAGAGACTTGCAATCAAGATTTGGACATGGCTGGTAAATATTGTTCTCAGAGTGGACAATCAGTGTACAGCCAACACCAAGATATGTGTGGCATTCTTCAGCTTTCTGATGAAGTCCTGGCTCACAATATTTTGTCGCGCTTGACACCGAGGGACGTTGCATCAATTGGTTCTGTTTGCAGGCGGATCCGGCAGCTAACAAAGAATGAGCATGTTAGGAAGATGGTATGTCAAAATGCTTGGGGCAAAGAAGTTACAGGTACATTGGAGCTGATGACCAAGAAGCTAGGATGGGGTCGTCTGACTCGAGAACTCACTACCCTTGAGGCTGTTTCTTGGAGAAAATTCACAGTTGGAGGCGCGGTGGAGCCTTCCCGCTGCAATTTCAGTGCTTGCGCAGCGGGAAACCGACTTGTTTTGTTTGGCGGTGAAGGAGTGGATATGCAGCCAATGGCCGACACTTTTGTTCTTAATCTTGATTCTAAAAATCCAGAATGGCGGAGGGTCAGCGTTAAATCATCCCCGCCGGGGAGATGGGGCCACACACTCTCGTGCTTGAACGGTTCTTGGTTGGTGGTTTTCGGTGGATGTGGTAGGAAAGGATTGCTGAATGATGTGTTTGTGCTTGATTTGGATGCTCAGCAGCCGACATGGACGGAAGTCTGCGGCGGAGCACCCCCGCTCCCAAGATCCTGGCACAGCTCTTGCACAATTGAAGGCTCCAAATTGGTCGTCTCTGGCGGCTGCACCGATTCCGGGGTGCTTCTCAGCGACACATATTTACTCGACCTCGCAAAAGATAATCCAATATGGAGAGAAATTCCGACCTCGTGGTCTCCTCCATCGCGGTTGGGGCACTCTCTCTCGGTCTACGGGAGGACCAAGATTCTCATGTTTGGTGGACTTGCAAAGAGTGGACACTTGAGATTGAGATCAGGTGAGGCTTACACAATTGATTTGGAAGATGAGAAACCGCAATGGAGGCAACTAGATTGCAATGAATTCAGCGGATTGGCGAGTCAAAATCCTGATGTTCCTCCTCCTAGATTGGATCATGTTGCTGTGAGCATGCCTTGTGGGAGGATCATCATATTTGGAGGGTCCATTGCTGGTCTTCACTCACCATCTCAGCTGTTTCTGTTGGACCCTTCTGAAGAGAAACCATCATGGAGGATCCTCAATGTTCCAGGGCAACCTCCTAAGTTTGCTTGGGGTCATAGCACTTGTGTGGTTGGAGGGACTAGGGTGTTGGTGTTGGGGGGACATACCGGAGAGGAATGGGTGCTCAATGAGTTGCATGAGTTGTGCTTAGCGAGCGACCTGTGA 1932 0.4834 MAMAKENKNKNKEDEDELHNHNSTGKRLKCMRKMKKNEEQDQVVDDDDGVVVVAGEAEESELPLQPGLFFYPTTPTSFVVADALEPDFPIIYVNKVFETSTGYRADEALGRNCRFLQYRDPRAQRRHPLVDPVVVAEIRRCLEEGIEFQGELLNFRKDGTPLVNRLRLAPIHDDDGTVTHVIGIQIFSEANIDLNCVSYPVFRETCNQDLDMAGKYCSQSGQSVYSQHQDMCGILQLSDEVLAHNILSRLTPRDVASIGSVCRRIRQLTKNEHVRKMVCQNAWGKEVTGTLELMTKKLGWGRLTRELTTLEAVSWRKFTVGGAVEPSRCNFSACAAGNRLVLFGGEGVDMQPMADTFVLNLDSKNPEWRRVSVKSSPPGRWGHTLSCLNGSWLVVFGGCGRKGLLNDVFVLDLDAQQPTWTEVCGGAPPLPRSWHSSCTIEGSKLVVSGGCTDSGVLLSDTYLLDLAKDNPIWREIPTSWSPPSRLGHSLSVYGRTKILMFGGLAKSGHLRLRSGEAYTIDLEDEKPQWRQLDCNEFSGLASQNPDVPPPRLDHVAVSMPCGRIIIFGGSIAGLHSPSQLFLLDPSEEKPSWRILNVPGQPPKFAWGHSTCVVGGTRVLVLGGHTGEEWVLNELHELCLASDL* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0091 643 Gene3D - 221 320 - -
Lja4g0091 643 ProSiteProfiles PAS repeat profile. 90 121 IPR000014 -
Lja4g0091 643 Pfam PAS domain 84 185 IPR000014 -
Lja4g0091 643 Gene3D PAS domain 71 196 - -
Lja4g0091 643 Pfam Galactose oxidase, central domain 328 378 - -
Lja4g0091 643 Pfam Kelch motif 552 599 IPR011498 GO:0005515
Lja4g0091 643 MobiDBLite consensus disorder prediction 1 28 - -
Lja4g0091 643 Pfam F-box domain 234 271 IPR001810 GO:0005515
Lja4g0091 643 Coils Coil 4 24 - -
Lja4g0091 643 MobiDBLite consensus disorder prediction 1 24 - -
Lja4g0091 643 CDD PAS 74 184 IPR000014 -
Lja4g0091 643 SUPERFAMILY PYP-like sensor domain (PAS domain) 85 185 IPR035965 -
Lja4g0091 643 SUPERFAMILY Galactose oxidase, central domain 315 632 IPR011043 -
Lja4g0091 643 SMART pac_2 149 190 IPR001610 -
Lja4g0091 643 Pfam Galactose oxidase, central domain 442 493 - -
Lja4g0091 643 Pfam Galactose oxidase, central domain 393 440 - -
Lja4g0091 643 Gene3D - 386 510 IPR015915 GO:0005515
Lja4g0091 643 Gene3D - 511 639 IPR015915 GO:0005515
Lja4g0091 643 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 21 641 - -
Lja4g0091 643 PANTHER ADAGIO PROTEIN 3 21 641 - -
Lja4g0091 643 SUPERFAMILY F-box domain 228 302 IPR036047 GO:0005515
Lja4g0091 643 TIGRFAM sensory_box: PAS domain S-box protein 88 184 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0091 Lja-Chr4 687999 691274 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0091 73 186 AGC Kinase Gene Family AT5G58140 44.737 3.32e-22 100
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0091 4 687999 691274 Lja4g0091 4 687999 691274 ECH