Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0083 ATGGTGTCAAGATCATATTCAAATCTACTTGAGCTGGCATCTGGTGAGGCTCCGTCTTTTGGGAACATGAACAGGCAAATTCCAAGGATCATGACTGTGGCAGGATTGATATCTAATGTTGATGATGACCCTTTGGAGAGTGTGTGCTCAGACCCATCTTCTTCATCTGCTCAGAGAGACAGGATCATAATAGTGGCAAATCAGTTACCTATAAGGGCTCAAAGGAAGCAAGATGGTGGTAACAGGAACTGGTTTTTCAGTTGGGATGAGGATTCACTTCTCCTCCAACTCAAAGATGGGTTAGGAGATGATGATATTGAGGTTATTTATGTTGGGTGCCTTAAAGAAGATGTGCATCCTAATGAACAAGATGAGGTTTCTCAGATTCTGCTTGAGACTTTTAAATGTGTTCCTACTTTTCTCCCTGGTGATCTTTTCACCAGGTACTATCATGGCTTCTGCAAGCAACAGTTATGGCCACTGTTTCATTACATGTTACCTCTTTCGCCCGACCTTGGTGGCAGGTTCAACAGGTCACTGTGGCAGGCTTATGTGTCTGTTAACAAGATATTTGCAGATAGGATTATGGAGGTAATTAACCCTGAAGATGACTTTGTGTGGATACATGATTATCATCTCATGGTGTTACCAACTTTCTTGAGGAGGAGGTTCAACAGGGTGAAACTTGGATTCTTTCTCCATAGCCCCTTTCCTTCATCAGAAATATACAAGACATTGCCTATAAGGGAAGAGCTTTTAAGGGCACTTTTGAATTCTGATTTGATTGGCTTCCACACATTTGATTATGCAAGGCATTTTCTCTCTTGTTGTAGTAGGATGCTTGGTCTTACCTATGAATCCAAAAGGGGTTATATTGGGCTTGAGTATTATGGTAGAACAGTTAGTATCAAGATACTACCTGTTGGAATTCACATGGGGCAGCTTCAATCGGTTCTGGGGTTAACAAAGACTGAAGAAAAGGTTTCTGAGCTCATTAGACAGTTTACTGATAGAGGAAGGGTAATGCTGCTTGGAGTGGATGACATGGATATCTTCAAGGGAATAAGTTTGAAGCTATTGGCCATGGAGCAGCTTCTCATTCAGCACCCTGAATGGCATGGGAAGGTTGTGCTTGTTCAGATAGCTAACCCTGCAAGGGGAAAAGGGAAAGATGTGAAGGAAGTGCAAGATGAGACAAATGCAATGGTGAAAAGGATCAATGAAACTTTTGGGAAACCTGGTTATGATCCTGTGATTCTGATTGAGGAGCCACTAAGTTTCTATGAGAGAGTTGCTTATTATGTTGTTGCTGAGTGTTGTTTAGTGACTGCAGTTAGGGATGGAATGAATCTCATACCTTATGAATATATAATCAGTAGACAAGGAAATGAGAAATTAGATAAAGTTTTGAGCTTGTGTTCCTCAACTAAGAAGAAAAGCATGTTGGTTGTGTCTGAGTTCATTGGTTGTTCCCCATCTTTAAGTGGAGCAATAAGAGTGAATCCATGGAACATTGATGCTGTGGCTGATGCAATGGACTCAGCTTTGGAAATGGCTGATTCAGAGAAACAACTTAGGCATGAGAAGCATTACAGATATGTTAGTACTCATGATGTTGGTTACTGGGCTCGTAGCTTCTTGCAAGATCTTGAAAGGTCTTGTAGTGATCACGTGCGGCGAAGGTGGTGGGGAATTGGGTTTGGATTGAGTTTTAGAGTTGTGGCACTTGATCCAAACTTCAGGAAGCTCTCAATGGAGCATATTGTTTCAGCTTACAAGAGGACAACGACTAGAGCGATCCTTTTGGACTATGATGGTACACTGATGCCTCAGGCTTCAATTGATAAGAGCCCAACCAGTGATTCAATTAAAATGCTTAATAGTTTGTGTAGAGATAAGAACAACATGGTGTTTATTGTGAGTGCTAAAAGCAGAATTACTCTAGTTGAATGGTTTTCTCCTTGTGAGAATCTGGGAATTGCTGCTGAGCATGGTTACTTTTTGAGACTGAGGCGGGATGCAGAATGGGAAACTTGTGGACCTCCAACAGATTGCAGCTGGAAACAAATTGCTGAGCCTGTAATGAAACTTTATACTGAAACAACTGATGGATCCACCATTGAAGATAAGGAGACAGCATTGGTTTGGTGCTATGAGGATGCAGATCCAGATTTTGGATCATGTCAAGCTAAAGAGCTTCTTAATCATCTTGAAAGTGTGCTTGCAAATGAACCAGTAACAGTCAAGAGCGGCCATAACACTTTGGAGGTTAAACCGCAGGGTGTAAACAAGGGGCTTGTGGCGAAACGCCTACTTTCCATCATGCAAGAAAAGGGTATGTCTCCTGATTTTGTTTTGTGCATAGGGGACGACCGTTCTGATGAAGACATGTTTGAGGTAATCACAAGTTCCATGGCTGGTCCTTCCATAGCACCAAGGGCTGAAGTATTTGCATGCACTGTTGGTAGAAAGCCTAGTAAGGCTAAGTACTATCTGGATGATAACACTGATATAGTGAGAATGGTGCAAGGTTTAGCCTGTGTTTCAGAGCAAGCAGTTTTATTTTAG 2568 0.4182 MVSRSYSNLLELASGEAPSFGNMNRQIPRIMTVAGLISNVDDDPLESVCSDPSSSSAQRDRIIIVANQLPIRAQRKQDGGNRNWFFSWDEDSLLLQLKDGLGDDDIEVIYVGCLKEDVHPNEQDEVSQILLETFKCVPTFLPGDLFTRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSLWQAYVSVNKIFADRIMEVINPEDDFVWIHDYHLMVLPTFLRRRFNRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLGLTKTEEKVSELIRQFTDRGRVMLLGVDDMDIFKGISLKLLAMEQLLIQHPEWHGKVVLVQIANPARGKGKDVKEVQDETNAMVKRINETFGKPGYDPVILIEEPLSFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNEKLDKVLSLCSSTKKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMADSEKQLRHEKHYRYVSTHDVGYWARSFLQDLERSCSDHVRRRWWGIGFGLSFRVVALDPNFRKLSMEHIVSAYKRTTTRAILLDYDGTLMPQASIDKSPTSDSIKMLNSLCRDKNNMVFIVSAKSRITLVEWFSPCENLGIAAEHGYFLRLRRDAEWETCGPPTDCSWKQIAEPVMKLYTETTDGSTIEDKETALVWCYEDADPDFGSCQAKELLNHLESVLANEPVTVKSGHNTLEVKPQGVNKGLVAKRLLSIMQEKGMSPDFVLCIGDDRSDEDMFEVITSSMAGPSIAPRAEVFACTVGRKPSKAKYYLDDNTDIVRMVQGLACVSEQAVLF* 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0083 855 CDD HAD_TPP 599 840 - -
Lja4g0083 855 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 553 - -
Lja4g0083 855 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 600 801 IPR006379 -
Lja4g0083 855 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 852 IPR001830 GO:0003824|GO:0005992
Lja4g0083 855 Gene3D Glycogen Phosphorylase B; 53 316 - -
Lja4g0083 855 SUPERFAMILY HAD-like 598 845 IPR036412 -
Lja4g0083 855 CDD GT20_TPS 61 551 IPR001830 GO:0003824|GO:0005992
Lja4g0083 855 Gene3D Glycogen Phosphorylase B; 317 535 - -
Lja4g0083 855 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 852 - -
Lja4g0083 855 Pfam Glycosyltransferase family 20 61 551 IPR001830 GO:0003824|GO:0005992
Lja4g0083 855 Gene3D - 597 729 IPR023214 -
Lja4g0083 855 Gene3D - 730 853 IPR023214 -
Lja4g0083 855 Pfam Trehalose-phosphatase 601 835 IPR003337 GO:0003824|GO:0005992
Lja4g0083 855 TIGRFAM T6PP: trehalose-phosphatase 597 845 IPR003337 GO:0003824|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0083 Lja-Chr4 644535 649101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0083 1 851 Trehalose Biosynthesis Gene Families AT1G68020 81.924 0.0 1475
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0083 4 644535 649101 Lja4g0083 4 644535 649101 ECH