Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lja4g0082 | ATGGTGAAATCCAAAGAGAATGCTTCTGGTTCTTCTTCTGTGGCTCCATTCCTTAACAAATGTTACGACATGGTGGAGGACGATTCCACCGACTCCATCATCTCCTGGACCGAACCCTCCGGCCACACCTTCGTCATCTCCGACATCACCGCTTTCTCCGTCACCCTCCTCCCTACCTATTTCAAACACAACAATTTCGCCAGCTTCATCCGCCAACTCAACATCTATGGTTTCAGGAAAGTCGATACGGATCGCTGGGAATTTGCGAATGAAAACTTTGTTAGGGGTCAAAAGCATTTGCTGAAGAATATACGCAGAAGGAAACACCCGCACGTTACGGATCAACAAAAAGCATTGCCGGAGCATAACAATTCTGATGAACCGTCACGAGAAGCACCTAATCATGGCCTTCGCAAAGAAGTTGAGAATCTGAAATCCGATAGAAATTCCCTCATGCAGGAGCTGGTCCATCTCAGTCAGCACCTGGAATCTGCTGAGAGTAAGATGCTTGTCCTGAGTGATCGCCTTCAAGGAATGGAGAAGCATCAGCAGCAGATGTTGTCATTCTTAGTCATGGTAGTGCAGAGCCCTGGGTTCATGGTTCAGCTGCTTCATCCGAAGGAAAATAGCTGGCGCTTGGCTGAAGCAGGGAACATGTTTGACCCTGGTAAGGAAGATGACAAACCGGTTGCTTCTGATGGGATGATTGTACAGTACAAACCACCTGTAGGTGAAAAAAGAAAGCATGTAATTCCAATTCCATTATCTCCTGGTTTTGATAGGCAGCCAGAACCTGAGCTTTCTGCAGATAGGTTAAAAGACTTGTGCATCAGTTCAGAGTTCTTGAAAGTGCTTCTGGATGAAAAAGTGTCTCCACTAGATAATCATTCTCCATTTCTTCTTCCAGATTTACCGGATGATGGCTCCTGGGAACAGCTTTTTCTAGGTAGTCCTTTCCTGGAAAACATTGAAGATACTGATCATGAAAATGAGGAGCCTACTGTTGGTGGAATGGAGATGGAAGCCACTATACCAGAAACTCCAAATGAACATTCTCGGATTTTTGAGTCAATGATTATGGAAATGGAGAAAACTCAAGTGTAA | 1104 | 0.4502 | MVKSKENASGSSSVAPFLNKCYDMVEDDSTDSIISWTEPSGHTFVISDITAFSVTLLPTYFKHNNFASFIRQLNIYGFRKVDTDRWEFANENFVRGQKHLLKNIRRRKHPHVTDQQKALPEHNNSDEPSREAPNHGLRKEVENLKSDRNSLMQELVHLSQHLESAESKMLVLSDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLHPKENSWRLAEAGNMFDPGKEDDKPVASDGMIVQYKPPVGEKRKHVIPIPLSPGFDRQPEPELSADRLKDLCISSEFLKVLLDEKVSPLDNHSPFLLPDLPDDGSWEQLFLGSPFLENIEDTDHENEEPTVGGMEMEATIPETPNEHSRIFESMIMEMEKTQV* | 368 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lja4g0082 | 367 | PANTHER | HEAT SHOCK TRANSCRIPTION FACTOR | 1 | 350 | IPR027725 | - | |
Lja4g0082 | 367 | MobiDBLite | consensus disorder prediction | 104 | 137 | - | - | |
Lja4g0082 | 367 | SMART | hsfneu3 | 13 | 107 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Lja4g0082 | 367 | MobiDBLite | consensus disorder prediction | 113 | 137 | - | - | |
Lja4g0082 | 367 | ProSitePatterns | HSF-type DNA-binding domain signature. | 57 | 81 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Lja4g0082 | 367 | SUPERFAMILY | "Winged helix" DNA-binding domain | 12 | 107 | IPR036390 | - | |
Lja4g0082 | 367 | Coils | Coil | 134 | 182 | - | - | |
Lja4g0082 | 367 | Pfam | HSF-type DNA-binding | 17 | 107 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Lja4g0082 | 367 | PRINTS | Heat shock factor (HSF) domain signature | 17 | 40 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Lja4g0082 | 367 | PRINTS | Heat shock factor (HSF) domain signature | 56 | 68 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Lja4g0082 | 367 | PRINTS | Heat shock factor (HSF) domain signature | 69 | 81 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Lja4g0082 | 367 | PANTHER | HEAT STRESS TRANSCRIPTION FACTOR A-8 | 1 | 350 | - | - | |
Lja4g0082 | 367 | Gene3D | - | 9 | 108 | IPR036388 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lja4g0082 | Lja-Chr4 | 636831 | 639557 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lja4g0082 | 14 | 318 | HSF | AT1G67970 | 48.860 | 2.30e-92 | 280 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HSF | Lja4g0082 | HSF_DNA-bind | 1.8e-30 | CL0123 |