Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0082 ATGGTGAAATCCAAAGAGAATGCTTCTGGTTCTTCTTCTGTGGCTCCATTCCTTAACAAATGTTACGACATGGTGGAGGACGATTCCACCGACTCCATCATCTCCTGGACCGAACCCTCCGGCCACACCTTCGTCATCTCCGACATCACCGCTTTCTCCGTCACCCTCCTCCCTACCTATTTCAAACACAACAATTTCGCCAGCTTCATCCGCCAACTCAACATCTATGGTTTCAGGAAAGTCGATACGGATCGCTGGGAATTTGCGAATGAAAACTTTGTTAGGGGTCAAAAGCATTTGCTGAAGAATATACGCAGAAGGAAACACCCGCACGTTACGGATCAACAAAAAGCATTGCCGGAGCATAACAATTCTGATGAACCGTCACGAGAAGCACCTAATCATGGCCTTCGCAAAGAAGTTGAGAATCTGAAATCCGATAGAAATTCCCTCATGCAGGAGCTGGTCCATCTCAGTCAGCACCTGGAATCTGCTGAGAGTAAGATGCTTGTCCTGAGTGATCGCCTTCAAGGAATGGAGAAGCATCAGCAGCAGATGTTGTCATTCTTAGTCATGGTAGTGCAGAGCCCTGGGTTCATGGTTCAGCTGCTTCATCCGAAGGAAAATAGCTGGCGCTTGGCTGAAGCAGGGAACATGTTTGACCCTGGTAAGGAAGATGACAAACCGGTTGCTTCTGATGGGATGATTGTACAGTACAAACCACCTGTAGGTGAAAAAAGAAAGCATGTAATTCCAATTCCATTATCTCCTGGTTTTGATAGGCAGCCAGAACCTGAGCTTTCTGCAGATAGGTTAAAAGACTTGTGCATCAGTTCAGAGTTCTTGAAAGTGCTTCTGGATGAAAAAGTGTCTCCACTAGATAATCATTCTCCATTTCTTCTTCCAGATTTACCGGATGATGGCTCCTGGGAACAGCTTTTTCTAGGTAGTCCTTTCCTGGAAAACATTGAAGATACTGATCATGAAAATGAGGAGCCTACTGTTGGTGGAATGGAGATGGAAGCCACTATACCAGAAACTCCAAATGAACATTCTCGGATTTTTGAGTCAATGATTATGGAAATGGAGAAAACTCAAGTGTAA 1104 0.4502 MVKSKENASGSSSVAPFLNKCYDMVEDDSTDSIISWTEPSGHTFVISDITAFSVTLLPTYFKHNNFASFIRQLNIYGFRKVDTDRWEFANENFVRGQKHLLKNIRRRKHPHVTDQQKALPEHNNSDEPSREAPNHGLRKEVENLKSDRNSLMQELVHLSQHLESAESKMLVLSDRLQGMEKHQQQMLSFLVMVVQSPGFMVQLLHPKENSWRLAEAGNMFDPGKEDDKPVASDGMIVQYKPPVGEKRKHVIPIPLSPGFDRQPEPELSADRLKDLCISSEFLKVLLDEKVSPLDNHSPFLLPDLPDDGSWEQLFLGSPFLENIEDTDHENEEPTVGGMEMEATIPETPNEHSRIFESMIMEMEKTQV* 368
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0082 367 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 1 350 IPR027725 -
Lja4g0082 367 MobiDBLite consensus disorder prediction 104 137 - -
Lja4g0082 367 SMART hsfneu3 13 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g0082 367 MobiDBLite consensus disorder prediction 113 137 - -
Lja4g0082 367 ProSitePatterns HSF-type DNA-binding domain signature. 57 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g0082 367 SUPERFAMILY "Winged helix" DNA-binding domain 12 107 IPR036390 -
Lja4g0082 367 Coils Coil 134 182 - -
Lja4g0082 367 Pfam HSF-type DNA-binding 17 107 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g0082 367 PRINTS Heat shock factor (HSF) domain signature 17 40 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g0082 367 PRINTS Heat shock factor (HSF) domain signature 56 68 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g0082 367 PRINTS Heat shock factor (HSF) domain signature 69 81 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lja4g0082 367 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-8 1 350 - -
Lja4g0082 367 Gene3D - 9 108 IPR036388 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja4g0082 Lja-Chr4 636831 639557 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0082 14 318 HSF AT1G67970 48.860 2.30e-92 280
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lja4g0082 HSF_DNA-bind 1.8e-30 CL0123
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0082 4 636831 639557 Lja4g0082 4 636831 639557 ECH