Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0075 ATGTCGGTAAGAACAGTGAAGGTAGGCAATGTATCTTTGGCTACTACAGAGAAGGATCTTAAAGATTTTTTCTCATTCTCTGGTGATATTCAATATGTTGAGATGCGAAGGGAATCTGAGACCACTCAGGTTGCATATGTTACCTTCAAGCATACGCAAGGAGCAGACACAGCAGTACTCTTGACGGGTTCCAATATTGCTAATGTTCCTGTCACAATTTCACCCGTTGAGAACTACCAGCTCCCTCCTGAGGCTCAACCCTTGAGTCCGAAAAAACAACCTTTTGCTGCTGTTAAGAAAGCTGAAGATGTGGTGAGCACTATGCTAGCAAAGGGTTTCATTCTAGGAAAAGATGCAGTTAGCAAGGCAAAGTCCTTTGATGAACGCCACAACTTGACCTCAAATGCTACTGCCACAGTTGCTTCCATTGACCGCAAAATAGGATTGAGCGGTAAACTAAGCGTTGGAACAGCAATTGTGAATGAAAAAGTGAGAGTGATGGATGAGAAGTTTCAGGTTTCTGAAAAGACAAAATCTGCTATTGCCGTTGCTGAGCAGAAGGCAAGTAGTGCTGGAACAGCAATCATGAGCAACCCTTATGTGTCCACTGGAGCTTCATGGGTGTCAAGTGCCATCACTGCTGTTGCAAAAGCAGCTGAGGATGTGAGCACATTGACCAAAGAGAAGGTTGAAAAGGCTGAGGAGGACAAGAAGGAGATCATTATCAGTGAAAAAAAAGATGAAGCTGTTGATGGATTGGCAAAGGTGCACTCTGAGCAACCTCCTGCAGCAGCAGCAGCACCTGGGAGCCCTCCAAAAGTTGGTGTTAATTCAGAACATGATAGTAAGTTGGGGATTATATGA 864 0.4433 MSVRTVKVGNVSLATTEKDLKDFFSFSGDIQYVEMRRESETTQVAYVTFKHTQGADTAVLLTGSNIANVPVTISPVENYQLPPEAQPLSPKKQPFAAVKKAEDVVSTMLAKGFILGKDAVSKAKSFDERHNLTSNATATVASIDRKIGLSGKLSVGTAIVNEKVRVMDEKFQVSEKTKSAIAVAEQKASSAGTAIMSNPYVSTGASWVSSAITAVAKAAEDVSTLTKEKVEKAEEDKKEIIISEKKDEAVDGLAKVHSEQPPAAAAAPGSPPKVGVNSEHDSKLGII* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0075 287 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 2 284 - -
Lja4g0075 287 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 4 78 IPR000504 GO:0003723
Lja4g0075 287 Coils Coil 216 236 - -
Lja4g0075 287 SMART rrm1_1 5 74 IPR000504 GO:0003723
Lja4g0075 287 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 2 284 - -
Lja4g0075 287 MobiDBLite consensus disorder prediction 252 287 - -
Lja4g0075 287 Gene3D - 2 74 IPR012677 -
Lja4g0075 287 SUPERFAMILY RNA-binding domain, RBD 3 79 IPR035979 GO:0003676
Lja4g0075 287 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 7 67 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0075 Lja-Chr4 601454 603743 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0075 4 601454 603743 Lja4g0075 4 601454 603743 ECH