Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0069 ATGGTGAAACCTCAACTGGGTTTTGCTTCATTCCGAGGTTTATTCATTTTCGGTCTTGTTCTAGTGCTTTCTCTTGTGATTACCCCAGCTAAGTGCCAGGATGATTCACAGGTAATGGGCATTTTGAGGAACATGATTCAACCCCCTGTTAGCTTCCAATGGTCAGACCCTAATGTCTGCAAATGGAAGCACGTTCAGTGTGGTCCTGGAAAACGTGTCACTGCCATTCAAATCGGGAACCAGAATCTTCAAGGCTCTCTCCCCAAAGAACTCGAGAAGCTCACAGAATTGGTGATATTTGAGTGCCAGGGAAATGCCTTAACTGGGTCATTCCCTTACCTTTCAAAATCCTTGCAGAGATTGGTCATCCATAGAAACAAATTCAGTTCCTTCCCCAGCGATTTCTTCAAGGGTATGAGCAGTTTGCAAGAGGTGAGAATGGACAACAACCCTTTTCTTCAGTGGCAGGTTCCTGACTCACTCAGAGACTGCGTTGCGCTGCAAATTTTCAGTGCTGAGAGTGCTAACCTTGTTGGAACTATCCCTGAGTTCTTTGGAAAAGATGGTCCATTCCCTGGTTTGGTTTATCTCTCTTTGTCTGATAATTCTCTTGAAGGTGGTTTACCTGAAACCCTTGGTGGTAGTTCAATTGAGAATCTCTTGGTGAATGGACAGAACAGCAACTCTAAACTCAATGGTACACTTGCTGTGTTGCAGAAGATGACTTCCTTGAAGCAAATTTGGGCTCATGGAAATGCATTCACTGGTCCAATCCCTGACTTGTCAAAGCTTAATCAATTATTTGATTTGGGGTTAAGGGATAACCAGTTGACTGGTGTTGTTCCACCCTCATTGTGGGATCTTCCAAGCCTCAAAGTTGTGAATTTGACCAACAACAATTTTCAAGGTCCAATTCCCAAGTTCAGAGATGGGGTAGCAGTGGACAATGATCTTGGTAGAGGGAGGAACCAGTTCTGCACAAGTGTACCTGGGGAGCCATGTAGTCCTTTGGTGAATGTTCTGCTATCTGTTGTGGAGCCTTTGGGTTATCCTCTCAAGTTTGCTGAGAGTTGGCAAGGTAATGATCCTTGTGCTAATAAATGGATTGGTATTGTTTGCTCTGGTGGAAACATCACTGTGATCAACTTTCAGAACATGGGTCTTTCTGGCACCATTTCTCCTAATTTTGCCAGCATTACTTCTCTGACAAAATTGCTTCTTGCTAACAATGCTATCACTGGTACCATACCAAAGGAACTCACTAGTATGCCTCTTCTGCAAGAGCTAGATCTTTCAAATAATCAGTTGTATGGCCGAAAACCGTCGTTCCGTGATGGTGTGGATGTCAAACTAGGTGGGAACCCTGATATTGGAAAGAATAAACCTTCTTCTCAAAATGGCTCAGGTTCTGGAGGCAACAAACGTAATGTTACAGCCATAGTTGTTGGAATTGTGGTAGGTGTTGTCATTTTACTTGGTGTTGTGGCTGCGATACTTTTTTATAGGAGAAAGTGGAAGCAGGAGGGAAAAGCTGAAAAGAAAACTGCAAACGGGGCACATCCTCGCCGTTATGAGGATGGAAAGGAGGTGAAGATACAGATTACAAGTGATGGTGTTGGTGGTGAAGGAACTAATGTGTTAAGCCCCACTTGTTATCAGGGGGACGCTAGTAATATGGTGATTTCAATTGAAGTTTTGAGAGACGTTACTGACAATTTTAATGAAGAAAACATACTGGGGAAGGGAGGTTTTGGCACTGTATACAAAGGAGAATTGCATGATGGGACAAAGATTGCTGTGAAAAGGATGCAGCTAGGAACGGTGGGCGAGACGGGGCTGAATGAGTTCATGGCTGAAATTGGAGTGCTTACTAAGGTTCGACACAAGCATTTGGTTGCACTCTTAGGTTATTGCTTGGATGCAAGTGAGAGACTTCTTGTCTATGAGTACATGTCTCAGGGTGCTCTTAGTACACATTTGTTCAACTGGAAAGTGGAAGGACTAAAACCGCTGGAATGGAAGACAAGGCTTAGTGTTGCCTTGGATGTTGCTAGAGGTGTTGAGTATCTTCATGTTCTGGGCCAACAGATTTTTATTCACAGGGATCTCAAACCATCCAACATTTTGCTTGGAGATGATATGCATGCTAAAGTATCAGACTTTGGATTGGTCAGGCTTGTTCCTGAAGGAAAAGCCTCATTTCAAACTAGACTTGCTGGAACTTTTGGTTACATGGCACCAGAGTATGCAGCCACCGGAAGACTTACAACAAAGGTTGATGTCTACAGTTTTGGGGTGATTCTCATGGAGATGATAACTGGAAGGAGAGCACTTGATAACTCCCTACCCGATGAGAACATCCACCTTGTTACATGGTTCCGGAAGATGCTAATGGAGAAAGACTCATTGAGAACCATCATTGACCCAGCAATTGAAGTTGATGAGGAAACCTACACCAGCATTAGCACTGTTGCTGAGTTAGCAGGGCAATGCACTGCAACAGACCCTTATCCGCGACCCGACATGAGCCATGTAGTGAATATGCTATTACCTCTTATTGAGGTGTGGAAGCCTACAAAGGTAGATGCTGAAGACGTTTATGGGATCAACTTTAATATGACATTACCAGAAGCACTCCAAAGGTGGCAGGATTTTGAAGGAACTAGCACCCTGGATTTATCATTGCATAATACTACTAGTGGAGATAATACAAGGTCAAACACAACCACTCAACAATCAGACAATGCAGGTTCCTTTACACCTTCTTCTGGACCATGA 2778 0.4363 MVKPQLGFASFRGLFIFGLVLVLSLVITPAKCQDDSQVMGILRNMIQPPVSFQWSDPNVCKWKHVQCGPGKRVTAIQIGNQNLQGSLPKELEKLTELVIFECQGNALTGSFPYLSKSLQRLVIHRNKFSSFPSDFFKGMSSLQEVRMDNNPFLQWQVPDSLRDCVALQIFSAESANLVGTIPEFFGKDGPFPGLVYLSLSDNSLEGGLPETLGGSSIENLLVNGQNSNSKLNGTLAVLQKMTSLKQIWAHGNAFTGPIPDLSKLNQLFDLGLRDNQLTGVVPPSLWDLPSLKVVNLTNNNFQGPIPKFRDGVAVDNDLGRGRNQFCTSVPGEPCSPLVNVLLSVVEPLGYPLKFAESWQGNDPCANKWIGIVCSGGNITVINFQNMGLSGTISPNFASITSLTKLLLANNAITGTIPKELTSMPLLQELDLSNNQLYGRKPSFRDGVDVKLGGNPDIGKNKPSSQNGSGSGGNKRNVTAIVVGIVVGVVILLGVVAAILFYRRKWKQEGKAEKKTANGAHPRRYEDGKEVKIQITSDGVGGEGTNVLSPTCYQGDASNMVISIEVLRDVTDNFNEENILGKGGFGTVYKGELHDGTKIAVKRMQLGTVGETGLNEFMAEIGVLTKVRHKHLVALLGYCLDASERLLVYEYMSQGALSTHLFNWKVEGLKPLEWKTRLSVALDVARGVEYLHVLGQQIFIHRDLKPSNILLGDDMHAKVSDFGLVRLVPEGKASFQTRLAGTFGYMAPEYAATGRLTTKVDVYSFGVILMEMITGRRALDNSLPDENIHLVTWFRKMLMEKDSLRTIIDPAIEVDEETYTSISTVAELAGQCTATDPYPRPDMSHVVNMLLPLIEVWKPTKVDAEDVYGINFNMTLPEALQRWQDFEGTSTLDLSLHNTTSGDNTRSNTTTQQSDNAGSFTPSSGP* 926
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0069 925 MobiDBLite consensus disorder prediction 458 472 - -
Lja4g0069 925 MobiDBLite consensus disorder prediction 893 925 - -
Lja4g0069 925 Gene3D Phosphorylase Kinase; domain 1 545 650 - -
Lja4g0069 925 SMART serkin_6 573 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0069 925 Pfam Leucine Rich repeats (2 copies) 400 436 IPR025875 -
Lja4g0069 925 ProSiteProfiles Protein kinase domain profile. 573 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0069 925 Gene3D Ribonuclease Inhibitor 337 461 IPR032675 -
Lja4g0069 925 CDD STKc_IRAK 579 852 - -
Lja4g0069 925 SUPERFAMILY Protein kinase-like (PK-like) 561 873 IPR011009 -
Lja4g0069 925 PANTHER OSJNBA0070M12.3 PROTEIN 17 922 - -
Lja4g0069 925 Pfam Leucine rich repeat N-terminal domain 41 67 IPR013210 -
Lja4g0069 925 Pfam Leucine rich repeat N-terminal domain 341 374 IPR013210 -
Lja4g0069 925 Pfam Protein kinase domain 574 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja4g0069 925 PANTHER TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED 17 922 - -
Lja4g0069 925 MobiDBLite consensus disorder prediction 449 472 - -
Lja4g0069 925 ProSitePatterns Protein kinases ATP-binding region signature. 579 601 IPR017441 GO:0005524
Lja4g0069 925 Gene3D Ribonuclease Inhibitor 32 331 IPR032675 -
Lja4g0069 925 Gene3D Transferase(Phosphotransferase) domain 1 651 867 - -
Lja4g0069 925 ProSitePatterns Serine/Threonine protein kinases active-site signature. 698 710 IPR008271 GO:0004672|GO:0006468
Lja4g0069 925 SUPERFAMILY L domain-like 41 440 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0069 Lja-Chr4 551372 555811 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0069 73 849 Receptor kinase-like Gene Family AT5G07280 30.825 1.20e-86 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Lja4g0069 Pkinase 6e-49 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0069 4 551372 555811 Lja4g0069 4 551372 555811 ECH