Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja4g0066 ATGGGTCTTGGGTTCAAGATGCAGCAGAGCCACCACCCTGTGGCTTTGAAGTTACATGAGCAAGCTGGGAGCCAGAGAAAGTTCACTTTCATTCAGAACTTCAGAAACTGGTTTCTACCCCTTCTGTTTGTATGGTTCATTGTTATGGCTGCATTTGGTGCCTGCATCTACCATAAAATGGATGCTGAAACTAAAGTCAGAAGGAAAGAGGTGCTGGGTAGCCTCTGTGATCAAAGGGCTAGAATGCTACAAGACCAATTCAGTGTCAGTGTCAACCATGTCCATGCCCTTGCCATCCTTGTTTCAACCTTCCATTACTACAGAAATACTTCAGCCATTGACCAGGAAACCTTTGCAGAATACACGGCCAGGACAGCATTTGAACGGCCATTAATGAGTGGGGTGGCCTATGCACAGAGAGTGGTTCACTCAGAGAGAGAAAGATTTGAGAAGCAACATGGGTGGGTTATAAAGACAATGGAAAGAGTGCCTTCAGGGGTTAGGGATGAGTATGCAGCAGTGATATTTGCACAGGAAACTGTCTCTTACCTTGAATCTATTGATATGATGTCTGGGGAGGAGGACCGAGAGAACATTTTGAGGGCTAGAGCCACTGGGAAAGCTGTTCTGACTAGCCCTTTCAGACTGCTGGATTCTCATCATCTTGGCGTGGTTCTAACATTTCCTGTTTATAAATCTAAGCTCCCTCCAGAGCCAACGACGGAAGAGGTCATTAAAGCCATAGCAGGATATATTGGAGGATCCTTTGATGTTGAGTCCCTTGTGGAGAATTTACTTGGTCAACTTGCTGGTAACCAAGCAATTTTGGTGAAGGTATATGATATAACAAACTCTAGCGACCCCCTAATCATGTATGGCAGCCAATATGAAGAGGGTGATATGTCTCTTGTCCATGAAAGTAAGCTTGATTTTGGAGATCCATACAGGAAACATCACATGATCTGTAGATATCACCAACAGGCACCAACAAATTGGATAGCATATACCACGGCATTCCTATTCTTTGTGATTCTTTGTTTAGTGGGTTACATTTTATATGCTGCTGGAACTCACATTGTCAAGGTAGAAGATGATTACAATGCAATGCAGGATTTAAAAGTCAAAGCAGAAGCAGCTGATATTGCCAAGTCACAGTTTCTAGCTACCGTCTCTCATGAAATTAGAACTCCCATGAATGGAATTTTAGGAATGCTTGGTCTGCTTTTACGCACAGAATTGAGTTCAACACAAAGAGACTATGCTCAGACTGCTCAAGCATGTGGGAAGGCACTAATAGCATTAATAAATGAGGTGCTTGACCGAGCTAAAATTGAAGCAGGCAAATTAGAGCTAGAAGCAGTTCCATTTGACCTTCGTTCCATACTTGACGATGTCCTTTCTCTTTTTTCTGAGAAGTCAAGACACAAAGGCTTAGAGCTGGCAGTGTTTGTTTCTGACAAAGTTCCGGATATAGTTATGGGCGATCCTGGGCGATTCAGACAAATAGTGACAAATCTTGTTGGAAACTCTGTTAAGTTCACTGAGCGAGGTCATATATTTGTTAAAGTCCATTTAGCTGAAAAAAGACAGTGCACAATGAATGGAAAATGTGAGACTTTTCTAAATGGAGGCTGTGATGATGTTTTGCATGTATCTGGCAGTTATAATTTGAAAACCCTTAGTGGATATGAAGCCGCTGATGAACGGAACAGCTGGGATAATTTTAAGCATCATATTGCTGACGAAGAATTTTTCTTTGATGCTTCGGTTAAAAAGTTGGCCTCTAGTGAATCTTATGAGCAAGTCACCTTGATGGTCAGCGTGGAGGACACTGGAATTGGGATTTCTTTCTCTGCCCAAGATAGTATTTTCATGCCTTTTGTGCAGGCTGACAGCTCAACCTCTCGAAACTATGGGGGTACCGGGATCGGCTTGAGTATCAGTAAGTGCTTGGTTGAACTGATGGGCGGTCAGATAAACTTCATAAGCCGACCCCAGGTCGGGAGCACGTTTTCATTCACTGCAGATTTCGGAACATTTAAGAAAAACTCAACAACTGACATGAAGAAACTTAACTTTGAAGATCTACCTTCTAGTTTTAGAGGTCTTAAAGCCATTGTGGTTGATGGAAAACCTGTTAGAGCTGCAGTGACTAGATACCATTTGAAGAGACTAGGGATACAAGCTAAAGTTGCAATTAGCATCAATAAGGCTGTTTCTTTATGTGGGAAAAATGGTTCTTTGACCTCGGCATTATTTCAGCCTGATATTATTTTTGTTGAGAAGGACTCTTGGGTTTCTGGAGAGGATGGTGGTATCTTCAATGCGTTTAAGATGCCTCAAATGATCCTTCTTGCAACCAATATCTGTAACGCTGAATTTGATAAAGCCAAAGCTGCAGGTTTCAGTGATACAGTGATCATGAAGCCACTGAGAGCTAGTATGCTGGCTGCTTGTCTTCAGCAAGTTTTCGGGACTGGCAAGACGAGGCAGTTTGGGAAAGACATGTCGAATGGTTCTTCAGTACGAAGCCTTCTTTGCGGAAAGAAAATCTTAGTGGTTGATGATAATTTGGTGAACCGAAGGGTCGCCGCCGGCGCGTTGAAAAACTTTGGAGCTGATGTCAAATGTGCAGCAAGTGGCAAAGCTGCTCTTGAAATGCTTCAATATCCTCACGATTTCGATGCTTGCTTCATGGATATTCAAATGCCAGAAATGGATGGGTTTGAGGCCACTCGTCGAATTCGGATGATGGAAAGAGAGGCAAGTGAGCAGCTGAAAAGTGAATCTGGTGAAGAAAATGGTAAGAAAAGTGAGTTCCACATGCCTATATTGGCCATGACAGCTGATGTAATCCATGCTACATATGATAAGTGCTTAAATTGTGGGATGGATGGATACGTCTCAAAGCCTTTTGAAGAAGAGAATCTCTATCAAGCAGTTGCAAAGTTCTTCAAGTCCAAGCCTGCTTCAGACTCATGA 2982 0.4269 MGLGFKMQQSHHPVALKLHEQAGSQRKFTFIQNFRNWFLPLLFVWFIVMAAFGACIYHKMDAETKVRRKEVLGSLCDQRARMLQDQFSVSVNHVHALAILVSTFHYYRNTSAIDQETFAEYTARTAFERPLMSGVAYAQRVVHSERERFEKQHGWVIKTMERVPSGVRDEYAAVIFAQETVSYLESIDMMSGEEDRENILRARATGKAVLTSPFRLLDSHHLGVVLTFPVYKSKLPPEPTTEEVIKAIAGYIGGSFDVESLVENLLGQLAGNQAILVKVYDITNSSDPLIMYGSQYEEGDMSLVHESKLDFGDPYRKHHMICRYHQQAPTNWIAYTTAFLFFVILCLVGYILYAAGTHIVKVEDDYNAMQDLKVKAEAADIAKSQFLATVSHEIRTPMNGILGMLGLLLRTELSSTQRDYAQTAQACGKALIALINEVLDRAKIEAGKLELEAVPFDLRSILDDVLSLFSEKSRHKGLELAVFVSDKVPDIVMGDPGRFRQIVTNLVGNSVKFTERGHIFVKVHLAEKRQCTMNGKCETFLNGGCDDVLHVSGSYNLKTLSGYEAADERNSWDNFKHHIADEEFFFDASVKKLASSESYEQVTLMVSVEDTGIGISFSAQDSIFMPFVQADSSTSRNYGGTGIGLSISKCLVELMGGQINFISRPQVGSTFSFTADFGTFKKNSTTDMKKLNFEDLPSSFRGLKAIVVDGKPVRAAVTRYHLKRLGIQAKVAISINKAVSLCGKNGSLTSALFQPDIIFVEKDSWVSGEDGGIFNAFKMPQMILLATNICNAEFDKAKAAGFSDTVIMKPLRASMLAACLQQVFGTGKTRQFGKDMSNGSSVRSLLCGKKILVVDDNLVNRRVAAGALKNFGADVKCAASGKAALEMLQYPHDFDACFMDIQMPEMDGFEATRRIRMMEREASEQLKSESGEENGKKSEFHMPILAMTADVIHATYDKCLNCGMDGYVSKPFEEENLYQAVAKFFKSKPASDS* 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja4g0066 993 ProSiteProfiles Histidine kinase domain profile. 389 679 IPR005467 -
Lja4g0066 993 SMART REC_2 849 981 IPR001789 GO:0000160
Lja4g0066 993 Pfam His Kinase A (phospho-acceptor) domain 382 447 IPR003661 GO:0000155|GO:0007165
Lja4g0066 993 ProSiteProfiles Response regulatory domain profile. 704 824 IPR001789 GO:0000160
Lja4g0066 993 CDD HATPase_EvgS-ArcB-TorS-like 499 677 - -
Lja4g0066 993 CDD REC_hyHK_CKI1_RcsC-like 851 981 - -
Lja4g0066 993 Gene3D CHASE domain 113 328 IPR042240 -
Lja4g0066 993 SMART HKATPase_4 494 679 IPR003594 -
Lja4g0066 993 Pfam CHASE domain 112 292 IPR006189 -
Lja4g0066 993 PANTHER TWO-COMPONENT HISTIDINE KINASE 24 989 - -
Lja4g0066 993 ProSiteProfiles CHASE domain profile. 109 321 IPR006189 -
Lja4g0066 993 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 369 448 IPR036097 GO:0000155|GO:0007165
Lja4g0066 993 SUPERFAMILY CheY-like 700 825 IPR011006 -
Lja4g0066 993 Gene3D - 60 112 - -
Lja4g0066 993 PANTHER HISTIDINE KINASE 4 24 989 - -
Lja4g0066 993 ProSiteProfiles Response regulatory domain profile. 850 985 IPR001789 GO:0000160
Lja4g0066 993 Pfam Response regulator receiver domain 851 981 IPR001789 GO:0000160
Lja4g0066 993 CDD HisKA 382 443 IPR003661 GO:0000155|GO:0007165
Lja4g0066 993 Gene3D - 446 682 IPR036890 -
Lja4g0066 993 SMART HisKA_10 382 447 IPR003661 GO:0000155|GO:0007165
Lja4g0066 993 Gene3D - 355 445 - -
Lja4g0066 993 PRINTS Bacterial sensor protein C-terminal signature 604 618 IPR004358 GO:0016310|GO:0016772
Lja4g0066 993 PRINTS Bacterial sensor protein C-terminal signature 622 632 IPR004358 GO:0016310|GO:0016772
Lja4g0066 993 PRINTS Bacterial sensor protein C-terminal signature 639 657 IPR004358 GO:0016310|GO:0016772
Lja4g0066 993 PRINTS Bacterial sensor protein C-terminal signature 663 676 IPR004358 GO:0016310|GO:0016772
Lja4g0066 993 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 436 674 IPR036890 -
Lja4g0066 993 Coils Coil 432 452 - -
Lja4g0066 993 SMART CHASE_2 109 294 IPR006189 -
Lja4g0066 993 SUPERFAMILY CheY-like 848 985 IPR011006 -
Lja4g0066 993 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 494 677 IPR003594 -
Lja4g0066 993 Gene3D - 844 990 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja4g0066 Lja-Chr4 527759 533964 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja4g0066 12 993 Histidine Kinase Gene Family AT2G01830 68.091 0.0 1353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja4g0066 HATPase_c 3e-31 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja4g0066 4 527759 533964 Lja4g0066 4 527759 533964 ECH