Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4886 ATGAGGGACGAAGAGATCGAGAAGCTCCGAGGAGTAGTTCGCGACTGCGTTAGCAAACACCTCTACTCCTCCGCCATCTTCTTCGCCGATAAGGTCGCCGCATTCACCAACGACCCCGCCGATATCTACATGCAAGCCCAAGCTCTCTTCCTTGGCCGCCACTACCGCCGCGCCTTCCACCTCCTCAACGCCTCCAAGATCGTCCTCCGTGACCTCCGCTTCCGCTACCTCGCCGCCAAATGCCTCGAGGAATTGAAGGAGTGGGATCAATGCCTTTCAATGCTGGGCGAGGCAGCTAAAGTGGATGAGGATGGAAATGTTTCCGACACGAAAGACTCAAATGTCATGTACTTGGATAAAGATGGCGAAGATCGCGAAATCAATATATCTTCTGCAATATGCTTCTTAAGAGGCAAAGCTTATGAAGCTCTAGAAAACCGTGCTCAGGCTCGATTGTGGTACAAAGCTGCTATAAAAGCAGATCCTTTATGCTATGAGGCTTTGGAATGTCTTATTGAAAACCACATGCTTACATGCGAGGAAGAAGCCAATTTGATCTCATCATTGCAATTTGGTAGTGAGGATGGATGGCTTTCATCATTTTATTCTTGTTTGGTAAAGAAGCATGACAAAGAAAATGTTGTTGAAGCCAAGTTCAGAGATCTTGAAAACAAAAGCTGTATAAGTGACCAGTCTGATCCTTGTTTTTTGCGCACACTGAAATCCAATACTGATCTGTTGGCCTGCAAAGCTGAATACTATCATCAATGTGGTGAATATCAGAAATGTTTTGAGTTAACATCTGTTTTGCTTGAGAAGGATCCATTTCATCTCAAGAGTACCTTAATACATCTAGCTGCTGCTATGGAGCTGGGGAATTCAAATGAGCTCTATCTGTTGTCATGTCATTTGGTGAAGGATTATCCTCAAAAGGCTTTATCATGGTTTGCTGTTGGTTGCTATTATTATTGTATCAAGAAGTATGATCAGTCCCGCCGTTACTTCGGCAAAGCAACTAGTCTAGAGGGGACATTTGCCCCTGGGTGGATAGGCTTGGGGAATGCCTTTGCTGCTCAAGAAGAGGGTGATCAGGCTATGTCAGCGTACCGTACTGCTGCTCGATTATTTCCTGGGTGCCATTTACCAACTCTTTATATTGGAATGGAGTGCATGCGGACTCACAGCTATAAGCTTGCTGAGCAGTTTTTTATGCAGGCTAAGTCGATTTGCGCCTCAGAACCACTTGTGTGTAATGAACTTGGAGTTGTTGCCTATCATATGAAAGAGTATAATAAAGCGGTATGGTGGTTCGAGAAAACATTAGCCCTGATTCCAACTTCTTTATGTGAGATGTGGGAGCCTACTGTAGTCAATCTTGCTCATGCATACAGAAAGTTGAAGATGTACCGAGAAGCAATATCATATTATGAAAAAGCACTTGCATTATCAACAAGAAGTGTGAGCACTTATGCTGGTCTTGCGTATAGTTACCACTTGCAGGATGATTTCACTACAGCAATTGCTTATTATCACAAAGCATTGTGGCTGAAACCGGATGACCAGTTCTGCACTGAAATGTTAAGCTGGGCTCTAGTTGATGAAAGTCGAAGGAGCATTGACCCAAACTTCAATTTCGGTGAAGTTTGA 1647 0.4414 MRDEEIEKLRGVVRDCVSKHLYSSAIFFADKVAAFTNDPADIYMQAQALFLGRHYRRAFHLLNASKIVLRDLRFRYLAAKCLEELKEWDQCLSMLGEAAKVDEDGNVSDTKDSNVMYLDKDGEDREINISSAICFLRGKAYEALENRAQARLWYKAAIKADPLCYEALECLIENHMLTCEEEANLISSLQFGSEDGWLSSFYSCLVKKHDKENVVEAKFRDLENKSCISDQSDPCFLRTLKSNTDLLACKAEYYHQCGEYQKCFELTSVLLEKDPFHLKSTLIHLAAAMELGNSNELYLLSCHLVKDYPQKALSWFAVGCYYYCIKKYDQSRRYFGKATSLEGTFAPGWIGLGNAFAAQEEGDQAMSAYRTAARLFPGCHLPTLYIGMECMRTHSYKLAEQFFMQAKSICASEPLVCNELGVVAYHMKEYNKAVWWFEKTLALIPTSLCEMWEPTVVNLAHAYRKLKMYREAISYYEKALALSTRSVSTYAGLAYSYHLQDDFTTAIAYYHKALWLKPDDQFCTEMLSWALVDESRRSIDPNFNFGEV* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4886 548 ProSiteProfiles TPR repeat profile. 414 447 IPR019734 GO:0005515
Lja3g4886 548 ProSiteProfiles TPR repeat profile. 487 520 IPR019734 GO:0005515
Lja3g4886 548 PANTHER CELL DIVISION CYCLE PROTEIN 16 HOMOLOG 6 535 - -
Lja3g4886 548 ProSiteProfiles TPR repeat profile. 453 486 IPR019734 GO:0005515
Lja3g4886 548 Gene3D Tetratricopeptide repeat domain 5 533 IPR011990 GO:0005515
Lja3g4886 548 SUPERFAMILY HCP-like 314 521 - -
Lja3g4886 548 ProSiteProfiles TPR repeat profile. 346 379 IPR019734 GO:0005515
Lja3g4886 548 SUPERFAMILY TPR-like 37 174 IPR011990 GO:0005515
Lja3g4886 548 Pfam Tetratricopeptide repeat 133 162 IPR019734 GO:0005515
Lja3g4886 548 Pfam Tetratricopeptide repeat 489 520 IPR019734 GO:0005515
Lja3g4886 548 PANTHER CELL DIVISION CYCLE 16,23,27 6 535 - -
Lja3g4886 548 Pfam Anaphase-promoting complex, cyclosome, subunit 3 19 97 - -
Lja3g4886 548 Pfam Tetratricopeptide repeat 458 482 IPR001440 GO:0005515
Lja3g4886 548 SMART tpr_5 312 345 IPR019734 GO:0005515
Lja3g4886 548 SMART tpr_5 414 447 IPR019734 GO:0005515
Lja3g4886 548 SMART tpr_5 346 379 IPR019734 GO:0005515
Lja3g4886 548 SMART tpr_5 131 164 IPR019734 GO:0005515
Lja3g4886 548 SMART tpr_5 453 486 IPR019734 GO:0005515
Lja3g4886 548 SMART tpr_5 72 105 IPR019734 GO:0005515
Lja3g4886 548 SMART tpr_5 244 277 IPR019734 GO:0005515
Lja3g4886 548 SMART tpr_5 487 520 IPR019734 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4886 291 519 Glycosyltransferase AT3G04240 22.707 6.28e-11 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4886 3 90906204 90915266 Lja3g4886 3 90906204 90915266 ECH