Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4878 ATGTCCAACAAAGGAAAAGACATAGCTGAAGGATCCTCGCCTGCTTCAGATCATCATCATCATCAACAACAGCAACAGCAGCCTCTGAGCAGGTATGAATCTCAGAAGAGAAGGGACTGGAACACCTTTGGACAATACTTGAGGAACCAAAGGCCTCCAGTGGCACTTTCACAGTGCAATTCCAACCAAGTGCTTGAATTTCTGAGGTACTTGGATCAATTTGGAAAGACCAAAGTGCATGTTCAAGGGTGTTTGTTTTTTGGTCAAGCTGAACCGCCTGGTCCTTGTACTTGTCCTCTAAGACAAGCTTGGGGGAGCCTTGATGCTCTCATTGGGAGGCTTAGAGCTGCTTATGAAGAAAATGGAGGCTTGCCTGAGGCCAATCCTTTTGCTAGCGGCACCATAAGGCTCTATCTACGCGAGGTTCGGGACTCTCAGGCTAAGGCTAGAGGGATCCCTTATAAGAAGAAAAAGAAGAAGAGGAATGTCATGAAGGCTATGACTGAGGGTGTTTCAAGTTCAAGCTTGCCTATGCAGTAG 540 0.4685 MSNKGKDIAEGSSPASDHHHHQQQQQQPLSRYESQKRRDWNTFGQYLRNQRPPVALSQCNSNQVLEFLRYLDQFGKTKVHVQGCLFFGQAEPPGPCTCPLRQAWGSLDALIGRLRAAYEENGGLPEANPFASGTIRLYLREVRDSQAKARGIPYKKKKKKRNVMKAMTEGVSSSSLPMQ* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4878 179 PANTHER PROTEIN G1-LIKE2 2 177 IPR040222 -
Lja3g4878 179 MobiDBLite consensus disorder prediction 1 35 - -
Lja3g4878 179 MobiDBLite consensus disorder prediction 158 179 - -
Lja3g4878 179 Pfam ALOG domain 23 144 IPR006936 -
Lja3g4878 179 PANTHER PROTEIN LIGHT-DEPENDENT SHORT HYPOCOTYLS 6 2 177 - -
Lja3g4878 179 ProSiteProfiles ALOG domain profile. 31 158 IPR006936 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4878 Lja-Chr3 90853336 90855823 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3760 3 74232998 74235522 Lja3g4878 3 90853336 90855823 ECH
Lja3g2979 3 54781015 54781578 Lja3g4878 3 90853336 90855823 ECH
Lja3g4878 3 90853336 90855823 Lja6g2957 6 58508063 58513036 ECH
Lja3g4878 3 90853336 90855823 Lja4g0926 4 7868825 7874181 ECH
Lja3g4878 3 90853336 90855823 Lja3g4878 3 90853336 90855823 ECH
Lja3g4878 3 90853336 90855823 Lja3g2979 3 54781015 54781578 PCT