Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4875 ATGGAGGAGAAACTGGCACATTCTGGGAGACCCATGAACGAGTTAGGGCTGAGTGAGCGGTTACGCGACTCACCGAGTTGCGGTGGTGATGATGGGAACAAGCCAGATTTCCGAGAACTCGATCTGGGTTCACCCATTTCGCCGTTACCGGGGCGACACCACCGACAGAGTGCGGCGGCGGCGACGACTACAAGTACTAGTACCACCACTAGTAGTGGTTCGTCTGGGGCGGGTTCTTGCCGGAGTGGGCATAATCTGGTTACGAGGAGATCCGATTCCGGTGAGCTTTCTGTGCAGAATAGTCCGACCCGGAGTGTGAAACCGGGTCACCGGAGATCCGATTCGTGTTCGTCGCAGCCGTTGATATACTCAGGGCAGAGTCAGAGATCTCCTTCCTCGTCTTCGTCGTCGTCCGGTGCTGCCGCTGTTAATTCGCCGCCGGTGAATGTTCTTCCGGCTGGGAACATATGTCCCTCCGGCAGGGTTCTCAAGCCTGCCATGGTGGTGAACCGGAGCTCGAGGCCGGATGTTTTGGGCACAGGGACAGGGAATTACGGGCATGGGAGTATAATGCGGGGCGGTAGAGGCGTCGGTGGTGGTGGTGGTGGCAGCACTGGCGGTGAGGCTGGGAGGTTGAGCGGTGGAAGCGATTCGGTGAAGAGGGTTGAGGCGGAAGAGGTTAAGAGAGCAGGGAATGAGGAGTACAGGAGGGGGCGGTTTGTGGAGGCGTTGCGCCTGTATGATCGGGCAATTGCATTGTCTCCGGGCAATGTGGCTTACCGGAGCAACAGGGCGGCGGCGTTGAGTGCTTTAGGACGGTTGTCGGATGCGGTAACGACGTGTGAGGAGGCTTTGGGGTTGGATCCTAATTATGGAAGGGCTCATCAGCGCTTGGCAACTATCTTTCTTAGGTTAGGACATGTTGAGAATGCTAGGAAGCACCTTTGTTATCATGGGCTGCAGCCAGATCCTTCGGAGTTGCAGAAGTTGCAAATGGCGGAAAAGCATATTAAGAAATGTGTTGATGTCCGGAGGATAAGAGATTGGAGAAGTGTTATGAAGGAAGTTGATGCTGCTATTGCTGCTGGCGTGGACTCTTGTGCAGAGCTCTTAATGTGTAGAGCAGAAGCCCTTCTGAAGCTTCACCAGATTGACGATGCCGAATCATGTTTATCACAGATTTCCAAATGTGGACCGCGTCCTACTTCCTCATCCGAGGCAAGGTTTTTTGGGATGCTCTCTGAAGCTTATTGCTTCTTTGTTAGATCTCAGATTGAGATGGCCCTTGGAAGGTTTGAGAATGCAGTTACGGCAGCTGAGAAAGCTAGTCAGATGGATCCCCGGAATATTGAAGTTGCTGTTTTGCTCAACAATGTAAGGATGGTGGCACGAGCTCGATTGCGCGGCAATGATCTCTTTAAATCAGAAAGGTTCACTGAGGCATGCTTGGCATACGGGGAAGGTCTGAGACTGGACCCTTCAAATTCTGTTCTCTATTGCAATAGAGCAGCATGCTGGTTTAAGCTAGGGCAATGGGAAAAATCAATTGAAGATTCCAATCAAGCCTTAAACATTCAACCAAATTATATGAAAGCCACTCTTCGAAGGGCAGCCTCAAATAGTAAGCTAGAAAGGTGGGCAGAAGCAGTTAAGGATTATGAGCTCTTGAGGAGACGACTACCAGATGACAAAGAAGTTGCTGAAGCTCTATTTCATGCGCAAGTTGCATTAAAGAAATCTCGTGGAGAAGAAGTACATAATTTAAAATTCGGCGGTGAAGTGGAGGACGTATCAGGTCTTGAGCAGTTTAGAGCTGCAATCGCTTTACCAGGTGTTTCTGTTGTCCATTTTCAAACGACGTCTAACCAAGAATGCAAGCAAATATCGCCTTTTCTGGATACACTTTGTGCTCGCTATCCATCTATTAACTTCCTTAAGGTGGATATTCAAGAAAGCCCGACAATTGCTACTGCTGAGAATATTAGGATTGTACCAACCTTCAAGATATACAAAAATGGCAGTCGAGTGAAGGAAATTATATGCCCTACTCGTGATATGCTGGAACATTCTGTTAGGCACTACAGCTTGTAA 2091 0.4974 MEEKLAHSGRPMNELGLSERLRDSPSCGGDDGNKPDFRELDLGSPISPLPGRHHRQSAAAATTTSTSTTTSSGSSGAGSCRSGHNLVTRRSDSGELSVQNSPTRSVKPGHRRSDSCSSQPLIYSGQSQRSPSSSSSSSGAAAVNSPPVNVLPAGNICPSGRVLKPAMVVNRSSRPDVLGTGTGNYGHGSIMRGGRGVGGGGGGSTGGEAGRLSGGSDSVKRVEAEEVKRAGNEEYRRGRFVEALRLYDRAIALSPGNVAYRSNRAAALSALGRLSDAVTTCEEALGLDPNYGRAHQRLATIFLRLGHVENARKHLCYHGLQPDPSELQKLQMAEKHIKKCVDVRRIRDWRSVMKEVDAAIAAGVDSCAELLMCRAEALLKLHQIDDAESCLSQISKCGPRPTSSSEARFFGMLSEAYCFFVRSQIEMALGRFENAVTAAEKASQMDPRNIEVAVLLNNVRMVARARLRGNDLFKSERFTEACLAYGEGLRLDPSNSVLYCNRAACWFKLGQWEKSIEDSNQALNIQPNYMKATLRRAASNSKLERWAEAVKDYELLRRRLPDDKEVAEALFHAQVALKKSRGEEVHNLKFGGEVEDVSGLEQFRAAIALPGVSVVHFQTTSNQECKQISPFLDTLCARYPSINFLKVDIQESPTIATAENIRIVPTFKIYKNGSRVKEIICPTRDMLEHSVRHYSL* 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4875 696 Pfam Tetratricopeptide repeat 230 290 - -
Lja3g4875 696 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 17 694 IPR044534 -
Lja3g4875 696 Gene3D Tetratricopeptide repeat domain 222 582 IPR011990 GO:0005515
Lja3g4875 696 CDD TRX_family 601 688 - -
Lja3g4875 696 MobiDBLite consensus disorder prediction 24 38 - -
Lja3g4875 696 Gene3D Glutaredoxin 589 695 - -
Lja3g4875 696 MobiDBLite consensus disorder prediction 1 146 - -
Lja3g4875 696 MobiDBLite consensus disorder prediction 173 225 - -
Lja3g4875 696 Pfam Tetratricopeptide repeat 420 449 IPR019734 GO:0005515
Lja3g4875 696 Pfam Thioredoxin 601 683 IPR013766 -
Lja3g4875 696 MobiDBLite consensus disorder prediction 57 144 - -
Lja3g4875 696 SUPERFAMILY Thioredoxin-like 499 694 IPR036249 -
Lja3g4875 696 ProSiteProfiles TPR repeat profile. 224 257 IPR019734 GO:0005515
Lja3g4875 696 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL1 17 694 - -
Lja3g4875 696 ProSiteProfiles TPR repeat profile. 496 529 IPR019734 GO:0005515
Lja3g4875 696 SUPERFAMILY TPR-like 224 452 IPR011990 GO:0005515
Lja3g4875 696 SMART tpr_5 224 257 IPR019734 GO:0005515
Lja3g4875 696 SMART tpr_5 530 563 IPR019734 GO:0005515
Lja3g4875 696 SMART tpr_5 258 291 IPR019734 GO:0005515
Lja3g4875 696 SMART tpr_5 496 529 IPR019734 GO:0005515
Lja3g4875 696 SMART tpr_5 368 401 IPR019734 GO:0005515
Lja3g4875 696 SMART tpr_5 462 495 IPR019734 GO:0005515
Lja3g4875 696 SMART tpr_5 416 449 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4875 Lja-Chr3 90818752 90822616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4875 461 606 U-box Gene Family AT3G07370 29.508 1.93e-08 54.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4875 3 90818752 90822616 Lja3g4875 3 90818752 90822616 ECH
Lja3g4875 3 90818752 90822616 Lja3g1241 3 13025340 13030899 PCT