Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4873 ATGAAGGCTTGTTGCTCTTATCTTTTCAGAAGAAAAGAGTCTTCCTCAGCCACACGACTCGAAGGAGTTGATATAGATATTTCAGATGTTCAGAACATCAAATTCTACACTTACAAAGAATTGCGAATTGCCTCTGAAGGTTTTAGTCCTGCAAACAAGATAGGGCAGGGAGGTTTTGGTTCAGTATACAAGGGAAAGCTAAGAGATGATTCCTTGGTTGCTATAAAGGTTTTGTCAGCTGAATCAAGACAAGGGGTGAATGAGTTCTTGACAGAAATTAAGGTGATTAGTAGTGTAGAGCATGAGAATCTGGTAAAATTGTATGGATGTTGTGTGGAAGATAATCACAGGATCTTGGTATATGGCTATCTTGAGAATAACAGCCTAGCACAAACACTTCTTGGTACAGGCCATAGTAGCATCCAATTCAGTTGGCGTGTAAGGCGGAACATATGCATAGGTGTCGCCCGGGGCCTCGCATTCCTTCATGAGGAGGTTAGACCACATATCATTCACAGAGACATAAAAGCAAGCAATGTACTACTTGACAAAGACCTCCAACCCAAAATTTCAGATTTTGGCCTTGCAAAGCTTATTCCACCAAACCTTACCCATATTAGTACCCGGGTTGCTGGAACAGTTGGTTATGTGGCACCTGAGTATGCCATACGAAGTAAAGTGACAAGAAAATCAGATATTTATAGTTTTGGAGTTCTACTACTAGAAATTGTTAGTGGGAGGCCTAACACAAACAAAAGATTACCTGTTGAAGAACAATATCTTCTCACAAGGGCATGGGATTTGTATGAGAGAGGGGAGCTACAAAGTTTGGTGGATCCATTTCTAGAGGGAGACTTCAATATGGATGAGGCTGTTAGGTTTTGTAAGATTTCTCTTCTTTGCACACAGGATTCTCCTCAGAATCGGCCTTCTATGTCCACAGTGCTTGGCATGCTTAGGGGTAGAAGGGAAGTGAATGAGGAGAATGTGACCAAACCAGGTATGATATTTGAATTTGTGCAAGCCATGGATGAAGGGAAACAAAAATTCAAGACTGAAGTGGAAAATAGCAGTTCAGGGAAGCAAGATGATTCATCTTCATCAGAAACTATGACCTCTTTTGCTACCATGACTTTCACTGCAATTTATGATCGGAGCAATTGA 1164 0.4107 MKACCSYLFRRKESSSATRLEGVDIDISDVQNIKFYTYKELRIASEGFSPANKIGQGGFGSVYKGKLRDDSLVAIKVLSAESRQGVNEFLTEIKVISSVEHENLVKLYGCCVEDNHRILVYGYLENNSLAQTLLGTGHSSIQFSWRVRRNICIGVARGLAFLHEEVRPHIIHRDIKASNVLLDKDLQPKISDFGLAKLIPPNLTHISTRVAGTVGYVAPEYAIRSKVTRKSDIYSFGVLLLEIVSGRPNTNKRLPVEEQYLLTRAWDLYERGELQSLVDPFLEGDFNMDEAVRFCKISLLCTQDSPQNRPSMSTVLGMLRGRREVNEENVTKPGMIFEFVQAMDEGKQKFKTEVENSSSGKQDDSSSSETMTSFATMTFTAIYDRSN* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4873 387 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 373 - -
Lja3g4873 387 Gene3D Phosphorylase Kinase; domain 1 22 123 - -
Lja3g4873 387 CDD STKc_IRAK 54 319 - -
Lja3g4873 387 ProSitePatterns Protein kinases ATP-binding region signature. 54 76 IPR017441 GO:0005524
Lja3g4873 387 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Lja3g4873 387 Pfam Protein kinase domain 51 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4873 387 Gene3D Transferase(Phosphotransferase) domain 1 124 335 - -
Lja3g4873 387 ProSiteProfiles Protein kinase domain profile. 48 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4873 387 SMART serkin_6 48 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g4873 387 MobiDBLite consensus disorder prediction 350 370 - -
Lja3g4873 387 SUPERFAMILY Protein kinase-like (PK-like) 31 332 IPR011009 -
Lja3g4873 387 PANTHER RECEPTOR-LIKE KINASE 3 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4873 Lja-Chr3 90795421 90798044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4873 12 368 Receptor kinase-like Gene Family AT1G53440 49.584 8.44e-108 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lja3g4873 Pkinase 3.2e-48 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4873 3 90795421 90798044 Lja3g4873 3 90795421 90798044 ECH