Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g4870 ATGGCCATGATGGATCCCACCAAGAAGCGCAAGCTCGACGAAAACGGTTACGGCGTCGTCGGCGGCGGTGACATCGACCACCTAATCCTCTCCCCATCAGAAGCCCGCAAGATCATCGAACGCTTCACCCAAGACCAACTCATCGACATCCTCCAAGACGCCGTCGTCCGCCACCCCGACGTCCTCGTCTCCGTCCGCGCCCTCGCCGACCCCGACGTCGCGCAGCGCAAGCTTTTCATCCGCGGCCTCGGCTGGGACACCACCACCGACGGCCTCCGCTCTCTCTTCTCCGCCTACGGCGAGCTCGAAGAAGCCGTCGTTATTCTCGATAAAGTCACCGGGAAATCGAAAGGGTACGGTTTCGTCACGTTCCGCCACGTCGACGGTGCGCTTCTTGCTCTCCGGGAGCCGAGTAAGAGGATCGATGGGCGCGTTACTGTCACGCAGCTTGCTGCTGCTGGGAACTCCGGGTCGAATACCAATGCTGCCGACGTCGCGCTTCGGAAGATCTATGTGGCGAATGTGCCGCCGGATCTCCCCGCTGATAAGCTTCTGGCGCATTTTTCGATCTATGGGGAGATTGAAGAGGGGCCGTTGGGGTTTGATAAGCTGACCGGGAAGTCGAAAGGGTTTGCGCTGTTTGTGTATAAGAATCCGGAGGGGGCGCAGGCGGCGCTTTTGGATCCAATGAAGACTGTGGAGGGGAGGCAGTTGAATTGCAAGCTGGCTATAACTGATGGCGGGAAGCAAGGGAAGCGTGGCGGGGCTGGTGCTGGTGCGGCGGGACCGGAGGTGGCTCAGGGGCATGGGAATTCTCATGGGCATCATGGGGATGGGATGGGGATGGCTCCGGGTGGTGGGGCGGGTTCAGGTGCAGGGTCGCTTTCTGGTGGTCAGTATGGTGGTCCGGTTGGGTTGGGTTCTTATGGTGGATTTGGTGGTGGGCTTCAGGGTCAGCCACCGATAGGGAATCATGCTATGAATCCATCGGTTGGTGGGGTTGGCAATCAGGCGAACCAGTCATCGTTGGGTGGTGGTACTGGCGCATACGGTTTGGCTGCTCATTATGGGGGCTATGGTGGGCTTGGATCTACCGGTTTCGGTGGATTGGGTGCTGCTTGTGCTGGTGCTGGTGGTTTTGGAGGTGGTGGTGGTGGTGGTGGTGCTGGTTCGGCAGCTGGTGCTGGTGCTCCTGGTGGACTTGGTGGTCCGGGTGGTGCGTATAGGAGTTCAGCTGGAATGCAAGCTGGTGGGTATCCAGAGGGTGGGCACCACTACAGTTTATCAGGTCCCGGCGGGTATCACAATCAGCAGCATCATCCTCCTACTGGGGCGTCACCTGTTCCTAGGGTTCCATATCCAAATGCTCACCCTTACTATTGA 1383 0.5915 MAMMDPTKKRKLDENGYGVVGGGDIDHLILSPSEARKIIERFTQDQLIDILQDAVVRHPDVLVSVRALADPDVAQRKLFIRGLGWDTTTDGLRSLFSAYGELEEAVVILDKVTGKSKGYGFVTFRHVDGALLALREPSKRIDGRVTVTQLAAAGNSGSNTNAADVALRKIYVANVPPDLPADKLLAHFSIYGEIEEGPLGFDKLTGKSKGFALFVYKNPEGAQAALLDPMKTVEGRQLNCKLAITDGGKQGKRGGAGAGAAGPEVAQGHGNSHGHHGDGMGMAPGGGAGSGAGSLSGGQYGGPVGLGSYGGFGGGLQGQPPIGNHAMNPSVGGVGNQANQSSLGGGTGAYGLAAHYGGYGGLGSTGFGGLGAACAGAGGFGGGGGGGGAGSAAGAGAPGGLGGPGGAYRSSAGMQAGGYPEGGHHYSLSGPGGYHNQQHHPPTGASPVPRVPYPNAHPYY* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g4870 460 PANTHER GEO13361P1-RELATED 4 420 - -
Lja3g4870 460 CDD RRM_RBM24_RBM38_like 76 151 - -
Lja3g4870 460 Gene3D - 161 303 IPR012677 -
Lja3g4870 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 168 245 IPR000504 GO:0003723
Lja3g4870 460 PANTHER UBP1-ASSOCIATED PROTEIN 2C 4 420 - -
Lja3g4870 460 Gene3D - 63 160 IPR012677 -
Lja3g4870 460 MobiDBLite consensus disorder prediction 320 339 - -
Lja3g4870 460 SMART rrm1_1 77 149 IPR000504 GO:0003723
Lja3g4870 460 SMART rrm1_1 169 241 IPR000504 GO:0003723
Lja3g4870 460 CDD RRM_RBM24_RBM38_like 168 243 - -
Lja3g4870 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 170 236 IPR000504 GO:0003723
Lja3g4870 460 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 145 IPR000504 GO:0003723
Lja3g4870 460 MobiDBLite consensus disorder prediction 413 460 - -
Lja3g4870 460 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 153 IPR000504 GO:0003723
Lja3g4870 460 MobiDBLite consensus disorder prediction 445 460 - -
Lja3g4870 460 SUPERFAMILY RNA-binding domain, RBD 160 275 IPR035979 GO:0003676
Lja3g4870 460 SUPERFAMILY RNA-binding domain, RBD 61 153 IPR035979 GO:0003676
Lja3g4870 460 MobiDBLite consensus disorder prediction 245 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g4870 Lja-Chr3 90779704 90785076 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g4870 164 316 C2H2 Transcription Factor Family AT2G19380 31.492 3.39e-12 66.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g4870 3 90779704 90785076 Lja3g4870 3 90779704 90785076 ECH