Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2447 ATGGGAACCCCGAATTCGAATGGCACGGCGCTGAAGCGGTCGCTGAGGAAGAAGGCGGCGAATTCGCGGAGCTACAATGAGGAGCTGATGGATGAGGATGACGTGTTTGAGGCGCAATTGGGTGGGAGGTTGAAGAAGAAGACTAAGACATTGGAAGGTTTGGAGAAAGAAACGGAGAGGGAGGCTATGATTGCGTTTTCGGTAGGTTTTCCGATTGATGCTTTGCTTGAGGATGAGATTAGGGCTGGGGTTGTGAGTGAGTTGGGTGGGGAGGAGCAGAATGATTATATGGTTGTAAGGAATCATATATTGGCTCTGTGGAGGGGGAATGTGAGGATGTGGTTGACAAAGGGGAAGATTAGAGAAACAGTGGTCAGCAAGTTTGAGCATTTGCTTCACTCTGCTTATGACTTCCTTTTTCATAATGGGTATATAAATTTCGGTGTTTTGCCGTCTTTTACTTCTCAGTTGCCTGAGTCGACTGAAGGGACTGTGATTGTTATTGGTGCTGGCCTTTCAGGGCTAGCGGCCGCGAGGCAGCTCATGTCGTTTGGCTTCAAGGTGGTGGTTTTGGAGGGTAGGAACCGCCCTGGCGGCAGAGTTTATACCCAGAAAGTGGGGGGCGAGGGTAAAATTGCCGCTTTAGATCTTGGTGGGAGTATTATTACTGGAATTCATGCGAACCCGCTGGGAGTTCTGGCTCGACAGCTTTCTATACCGCTTCATAAAGTCAGGGATGATTGCCCTTTGTACAAGCCAGATGGGGCGCCTGTTGATAAGGAGACAGATTCAAAAGTTGAATTCACATTCAATAGGTTGCTCGACAAAGTTATGGAGCTTAGGCAAATTATGGGTGGGTTTGGAAGCGATATCTCGCTGGGTGCAGTCTTGGATAAACTCAGGGATGTATATGCTGTGGCGCGAAGTACTGATGAGAAGCAATTGCTTGATTGGAATCTGGCCAATTTAGAATATGCAAATGCTGGATGTCTTTCAAATCTTTCAGCAGCCCATTGGGATCAGGATGATCCTTATGAAATGGGTGGTGATCACTGTTTTCTTGCTGGAGGCAATTGGGGATTGATAAAAGCTTTATGCGAAGGAGTTCCCATCTTCTATGGAAAGACAGTCAGCACCATCAGATATGGAAATGAGGGTGTGGAGGTTATTGCTGGAGATCAAGTCTTTCAAGCAGATTTCGCCTTATGCACTGTGCCTCTTGGAGTTCTGAAAAAGAAGACCATCAGTTTTGAACCTGAATTACCTGCAAGAAAGCTGGAAGCAATTGACAGGCTGGGTTTTGGACTGCTAAACAAAGTGGCTATGGTTTTTCCCCATGTGTTTTGGGGGGAAGATCTGGACACTTTTGGATGTCTCAATGAACATAGTCATCTACGCGGGGAATTCTTCTTATTTTACAGTTACCATACTGTTTCTGGGGCCCCAGGACTAATTGCGCTGGTGGCTGGTGAAGCCGCACAACTATTTGAAGCCACCGATCCATCCGTTTTGCTCCATCGCGTTTTGACCGTTCTAAGAGGTATATATAATCCTAAAGGCATCACTGTACCTGATCCAATACAGTCAATTTGCACAAGATGGGGAAGTGATCCCCTTTCTTATGGTTCGTACTCTCATGTTGGTGTGCAATCATCTGGTGGTGATTATGATATACTTGCAGAAAACGTGGGGGGCCGACTGTTCTTTGCGGGTGAAGCCACAACTAGGCAATATCCAGCCACCATGCATGGGGCTTTCTTGAGTGGCTTGAGAGAAGCTTCACGCATTTACCAATCAGCCCATGTTCTGGAAAATCCTAGGAAGTCCATGCCTAAGATACCAAACAATAATACATTGGTTGGTTTATTCAAGAAGCCTGATTTGGACTTTGGAAATTTTGCTTTTATATTCGATCATTCATCAGAAAGTCCACAGTCAATGGGGATTCTGCAAATCACTTTTGCTGGTGCTGAAGAAAGTTCCAAGGAGCTATCAAGCAGCTATCCAGATCCTGCAAAGTTGCCATTGCAGCTTTACACTATTATATCTCGTGAACATGTGCAGCAGCTACAGCAAATTGAAGGAGGGGATGAAAGTAGGCTGTCATATTTGACAAAAAGCCTCGGGTTGAAGCTCATGGGATTGAATGCTTTATACAGTACAGGTAACTCGGTAATTGCTAGCATTGCCAGCTCGCGAAAAGGCGGCAGGGGCAGGAATCGCAAGATTACTGCATAA 2238 0.4598 MGTPNSNGTALKRSLRKKAANSRSYNEELMDEDDVFEAQLGGRLKKKTKTLEGLEKETEREAMIAFSVGFPIDALLEDEIRAGVVSELGGEEQNDYMVVRNHILALWRGNVRMWLTKGKIRETVVSKFEHLLHSAYDFLFHNGYINFGVLPSFTSQLPESTEGTVIVIGAGLSGLAAARQLMSFGFKVVVLEGRNRPGGRVYTQKVGGEGKIAALDLGGSIITGIHANPLGVLARQLSIPLHKVRDDCPLYKPDGAPVDKETDSKVEFTFNRLLDKVMELRQIMGGFGSDISLGAVLDKLRDVYAVARSTDEKQLLDWNLANLEYANAGCLSNLSAAHWDQDDPYEMGGDHCFLAGGNWGLIKALCEGVPIFYGKTVSTIRYGNEGVEVIAGDQVFQADFALCTVPLGVLKKKTISFEPELPARKLEAIDRLGFGLLNKVAMVFPHVFWGEDLDTFGCLNEHSHLRGEFFLFYSYHTVSGAPGLIALVAGEAAQLFEATDPSVLLHRVLTVLRGIYNPKGITVPDPIQSICTRWGSDPLSYGSYSHVGVQSSGGDYDILAENVGGRLFFAGEATTRQYPATMHGAFLSGLREASRIYQSAHVLENPRKSMPKIPNNNTLVGLFKKPDLDFGNFAFIFDHSSESPQSMGILQITFAGAEESSKELSSSYPDPAKLPLQLYTIISREHVQQLQQIEGGDESRLSYLTKSLGLKLMGLNALYSTGNSVIASIASSRKGGRGRNRKITA* 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2447 745 Pfam SWIRM domain 73 147 IPR007526 GO:0005515
Lja3g2447 745 Gene3D - 61 159 IPR036388 -
Lja3g2447 745 SUPERFAMILY FAD-linked reductases, C-terminal domain 433 546 - -
Lja3g2447 745 ProSiteProfiles SWIRM domain profile. 55 156 IPR007526 GO:0005515
Lja3g2447 745 PANTHER FLAVIN MONOAMINE OXIDASE 40 735 - -
Lja3g2447 745 SUPERFAMILY Homeodomain-like 57 159 IPR009057 -
Lja3g2447 745 PANTHER LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 2 40 735 - -
Lja3g2447 745 SUPERFAMILY FAD/NAD(P)-binding domain 162 598 IPR036188 -
Lja3g2447 745 Gene3D - 165 595 IPR036188 -
Lja3g2447 745 Pfam Flavin containing amine oxidoreductase 172 596 IPR002937 GO:0016491
Lja3g2447 745 MobiDBLite consensus disorder prediction 1 27 - -
Lja3g2447 745 Gene3D - 247 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2447 Lja-Chr3 30290286 30294080 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI or SNF-SWI3 Lja3g2447 Amino_oxidase 9.4e-88 CL0063