Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2439 ATGAACCAGAAGGCCAACGTTTCCAAGGAGCTCAACGCCAAGCACAAAAAGATACTTGAAGGACTCCTTAAATTGCCGGAGAATAGGGAATGTGCTGACTGCAAAGCTAAAGGCCCAAGATGGGCTAGTGTCAATCTTGGTATATTTATATGCATGCAGTGCTCCGGAATACATCGAAGTCTTGGGGTACACATCTCAAAGGTTCGCTCTGCTACTTTGGACACCTGGCTCCCTGAGCAAGTAGCATTCATTCAATCGATGGGAAATGAGAAGGCAAATAGTTACTGGGAAGCAGAATTGCCGCCAAATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGATAAGAGATGGGTTTCAAGAGACGGGAATTCAAAATCACCTTCTAGGCTGCAAGATGAGAAAACTCAATCAAATTGGCAAAATCCAGGGGAAAGAGGTAGGCAGAGCTATGTAACTGCATCTGAGAATGCTTTTGTGGAAAGGAAGAAAATCCAACAATCCAATGTAATTCCGGCTACAAGAATCAGTCCATCAAATGTAATTCCTGCGACAAGAATCAGTGTTCCTGCTCCTCCTAAAGGACCTGAGCAGGTAACTCATGTGGCCAAACCTCAGCATATTGAGAAAGTGGAACCTGCGGTGCCACAACCACAAGCTGAAACTTCACAGTCTACTGGCACAGCTCAAAATTCCGCCCCCAAAGTTGACTATGCTACTGACCTTTTTGATATGCTGTCTATGGATGATCCAAGTGAAAAGAGCTCAGGTCCAGCTGATGCTACTGCTGATGATAATAACTGGGCAGGTTTTCAGTCTGCTGCAGAGACATCAACAGCCAAGAAGACTGAGACCACGAAAACAGTTGAAAATACACCCCGTCCAACTTCTGGAATCGAGGATCTGTTTAAAGATTCACCTTCAATTACACCAAGCTTAGCTTCAGAAAAGCCACAAAAAGATGTTAAAAATGACATCATGAGTCTTTTTGAGAAGACCAATATGGTGTCTCCATTTGCTATGCATCAACAGCAGCTAGCCATGCTGGCACAGCAACAGTCTCTTCTAATGGCTGCTGCTGCTAAATCTGCAGGTGGGGATTCCAAGTATTCTTCTAGTGTACAGCAACCCGGGTCCAATATTCCTATCCAAAGTTGGCCAACGGCTGGTTACCCTATTCCAGGAGTAATGCCCATCGCAGGTCAGGGAGAGTTGCAGAAACTTATGCAGACAATGAACATGACTTCAGCGCATCCAGCAGGGAGCTCAGTTCAGTATCCACCATCTAGTTACTACACTATGGGGCAAGTTGCTCCTGTTAATGGTATGATGACAGCGGGAGCGAGCAAACCTCAGTCAGCAGCTCCGGTATCATCAACCACTCCTCAGAAGGAGAAGGAATATGATTTTTCCTCCTTAACACAAGGAATGTTTGCGAAGCAGTGA 1458 0.4486 MNQKANVSKELNAKHKKILEGLLKLPENRECADCKAKGPRWASVNLGIFICMQCSGIHRSLGVHISKVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEDKRWVSRDGNSKSPSRLQDEKTQSNWQNPGERGRQSYVTASENAFVERKKIQQSNVIPATRISPSNVIPATRISVPAPPKGPEQVTHVAKPQHIEKVEPAVPQPQAETSQSTGTAQNSAPKVDYATDLFDMLSMDDPSEKSSGPADATADDNNWAGFQSAAETSTAKKTETTKTVENTPRPTSGIEDLFKDSPSITPSLASEKPQKDVKNDIMSLFEKTNMVSPFAMHQQQLAMLAQQQSLLMAAAAKSAGGDSKYSSSVQQPGSNIPIQSWPTAGYPIPGVMPIAGQGELQKLMQTMNMTSAHPAGSSVQYPPSSYYTMGQVAPVNGMMTAGASKPQSAAPVSSTTPQKEKEYDFSSLTQGMFAKQ* 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2439 485 MobiDBLite consensus disorder prediction 123 153 - -
Lja3g2439 485 MobiDBLite consensus disorder prediction 278 324 - -
Lja3g2439 485 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 179 485 IPR044520 GO:0005096
Lja3g2439 485 CDD ArfGap 19 117 - -
Lja3g2439 485 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Lja3g2439 485 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Lja3g2439 485 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Lja3g2439 485 MobiDBLite consensus disorder prediction 221 239 - -
Lja3g2439 485 Gene3D Arf GTPase activating protein 1 131 IPR038508 -
Lja3g2439 485 SUPERFAMILY ArfGap/RecO-like zinc finger 15 124 IPR037278 -
Lja3g2439 485 MobiDBLite consensus disorder prediction 278 299 - -
Lja3g2439 485 MobiDBLite consensus disorder prediction 251 270 - -
Lja3g2439 485 PANTHER ARF GTPASE ACTIVATOR 179 485 - -
Lja3g2439 485 Pfam Putative GTPase activating protein for Arf 17 125 IPR001164 GO:0005096
Lja3g2439 485 MobiDBLite consensus disorder prediction 217 239 - -
Lja3g2439 485 MobiDBLite consensus disorder prediction 449 485 - -
Lja3g2439 485 PANTHER ARF GTPASE ACTIVATOR 1 180 - -
Lja3g2439 485 MobiDBLite consensus disorder prediction 134 153 - -
Lja3g2439 485 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 180 IPR044520 GO:0005096
Lja3g2439 485 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 130 IPR001164 GO:0005096
Lja3g2439 485 SMART arf_gap_3 16 130 IPR001164 GO:0005096
Lja3g2439 485 MobiDBLite consensus disorder prediction 450 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2439 Lja-Chr3 30117556 30125054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2439 16 123 C2H2 Transcription Factor Family AT4G05330 49.138 5.37e-30 118