Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g2382 ATGTCGTGGTCACAAGAACAAGAAGGAAGAGGAAGAAGAAGAAGAGCACAAGCACAACCAAGCCAAGTAGTGGGGTTTGTTTTCTTAATTGCCTCATTCATGATCCTCACAACAACCTTAACCTCCACACTGACAACCTCAGCTTCTGCTACTCCCACCACCAACAACAACGATGATGTTGCAGTAGTAACCTTGTTAACCTCGTTCAAGACATCCTATGTTTCCTCTGACCCATACAACTTTCTCTCAACCTGGTCCGCCGCCGCCACCTCTCCCTGCTCCTGGCGCGGCGTTTCCTGCTCCGCCGCCGGCGATGTTACCACCGTCAACCTCACCGGCGCTTCCCTCACCGGCACGCTTCACCTCCCGACCCTGACTTCAATACCCACTTTGCAAAACCTTCTCTTACGCGGAAATTCCTTCAACGCTTTCAACTTCTCCGTTTCCTCTTCTTGTTCCCTCACCACCCTCGACCTCTCAGCTACCAACTTCTCCGGCGAGTTCCCGTTTCACGACCTCACTCCCTGCCGCGGCCTCAACCACCTCAACCTCTCCCGGAATTTCATCACCGGCGCCGCCGCCCAATATCACTCTCGCAGTTTTGGTCCTTCTTCTCTGCTTGAGCTTGACGTTTCGAGGAATTTGTTTTCTGATTTTAGCTTTGTGGCGTCTGCGGTTGCGGATTGTGGCGGTTTGGTTATGCTGAATTTCTCTGACAACCGAGTTGCGGGTCAACTCAGTGAGTCGCTTGTTCCTTGCGCGAACCTTTCTACTCTGGATATTTCCCACAACCTGCTTTCTGGGAAGATACCCCCTCGTATTGTGGGAGATGCTGTTGAGGTTTTGGATCTGTCAAGCAACAATTTTTCTGATGGGTTTTCTGGGGTTGATTTTGGGAAGTGTGAGAGGCTTGTTTGGTTGAGTTTCTCTCACAATGAGCTTTCAAGTGGTGAGTTTCCACCGAGTTTGAGCAACTGCAAGGTGCTGGAGACTGTTGATTTTTCCCACAATGAGCTCAGGTTGGAGATTCCTGGGGTTCTTCTTGGTGGGTTAAGGAGTTTGAAGGAACTGTTTCTTGGGCATAATCAGTTTTATGGTGTGATACCTATGGAGCTTGGAATGGCTTGTGGGACTTTGGAAGTGCTTGATCTGTCTCAGAATAAGCTTTCTGGTGAGTTGCCTTTGACATTTGGGAAGTGCTTTTCTTTGAAAAGTCTAAACCTTGCTAAGAATTATCTCTCTGGAAACTTCCTTGCCTCAGTTGTCAGCAACATTTCAAGTCTCAGGTATCTCTATGTGCCATTTAACAACATAACTGGGTCTGTTCCATTGTCTCTTGCCAATTGTACACAGCTTCAGGTTCTTGACCTCAGTTCCAATGCCTTCACTGGCAATGTCCCTTCCGGGATTTGCTCTTCTCTTTCGAACTTGGAGAAGATGCTTTTGGCTGGCAATTACCTTTCAGGGGAGGTTCCTGCTGAGCTTGGTGGGTGCAAGAGTTTGAGGACAATTGATTTCAGCTTTAACAATCTGAAGGGCTCAATACCCTTGGAAGTTTGGTCCTTGCCTAATCTTTCTGACTTGATTATGTGGGCAAACAACCTCAGTGGGGAGATTCCTGAAGGAATCTGTGTCAATGGAGGGAACCTTGAGACCTTGATTCTCAACAATAACTTCATCTCAGGCTCCATTCCTCAGTCAATTGCTAATTGCACCAACATGATTTGGGTGTCCCTCGCTAGTAACCGGATCACCGGGGGAATTCCTGCTGGTATTGGGAACCTGAATGCACTTGCAATCCTCCAACTAGGTAACAATTCACTCACTGGATTAATCCCTCCAGCGATTGGGAAGTGTAAGACGCTCATATGGTTAGATTTGAACAGCAATAACCTTACTGGTACTGTCCCACATGAGCTTTCCAATCAAGCTGGATTGGTTATTCCTGGGAGTGTTTCAGGGAAGCAGTTTGCATTTGTGAGAAATGAAGGTGGAACAAATTGCAGGGGAGCTGGGGGGCTAGTTGAATTTGAAGATATCAGGGTGGAGAGGCTTGAAGGTTTTCCTATGGTTCACTCCTGCCCATTAACAAGAATCTACTCTGGTTTGACTGTTTACACCTTCCCCTCCAATGGCAGCATGATCTACCTTGACCTTTCCTACAATTTCTTGGAAGGAAGCATTCCTGAAAATTTGGGTGGAATGGCCTATTTGCAGGTCTTGAATCTGGGACACAATAGGCTGATTGGGAATATTCCAGAGAGTTTTGGTGGTCTTAAAGCTATTGGAGTGCTTGATCTCTCCCACAACAACCTTCAAGGATTCATCCCTGGCTCATTGGAAAGTCTATCTTTTCTCAGTGACCTTGATGTGTCTAATAATAACCTCACAGGCTCCATTCCTTCTGGGGGTCAGCTAACCACTTTCCCGTCATCTAGATATGAAAACAACTCTAACCTTTGCGGCGTCCCGTTAGAGCCGTGTGGTGCGTCGAATCACTCAACAGGTTTTCATACTTTGAAGAAGAAGCAACCTGCTGCAGAAGGGATAGTCATTGGCCTTCTTCTGTTTCTCTTGGTTGTTCTTGGGCTTTTGTTAGCTTTCTATCAAGTGAAAAAGATCCGGAGGAAGGAGAAAAAGAGAGAAAAATATATAGAAAGTCTTCCAACTTCAGGTAGCAGCAGTTGGAAGCTTTCAAGCTTTCCTGAGCCTCTAAGCATCAATGTTGCAACCTTTGAGAAGCCTCTGAGGAAGTTGACATTCGCACATCTTCTTGAGGCGACTAATGGCTTCAGTGCTGAAAGCTTGATAGGGTCTGGAGGGTTTGGTGAGGTCTACAAAGCTAAGCTAAAAGATGGTTGTGTTGTTGCTATCAAGAAGCTCATTCATGTGACGGGTCAGGGAGATAGAGAGTTCATGGCTGAAATGGAAACTATTGGGAAGATTAAACATAGGAACCTGGTTCCACTACTAGGTTACTGCAAAGTCGGCGAGGAGAGGCTTCTTGTGTATGAGTACATGAAATGGGGAAGCCTTGAGGCTGTTCTACATGAAAGGGGTAAAGGAGGCGGCACAGGAAGCCTTGACTGGGAAGCAAGAAAGAAGATAGCTATAGGGTCAGCAAGAGGTCTTGCATTTCTTCACCATAGTTGCATACCTCATATCATACACAGGGACATGAAGTCCAGCAACGTTCTCCTTGATGAAAATTTTGAGGCTAGAGTTTCAGATTTTGGCATGGCAAGATTGGTGAATGCCCTTGACACTCATCTCACAGTGAGCACACTTGCAGGAACACCAGGTTATGTACCTCCTGAATACTACCAGAGTTTTAGATGCACTGCAAAAGGGGATGTCTATAGTTATGGTGTCATACTGCTGGAGCTTCTATCAGGGAAGAGGCCGATTGACTCGGTGGAGTTTGGTGATGACAACAATCTTGTTGGATGGTCGAAGAAGCTTTATAGAGAGAAAAGAATCATTGAAATTCTTGATCCTGACTTAATTGTGCAAACATCTAGTGAAAGTGAGCTATGTCAGTATTTGAAAATTGCTTTTGAATGTCTAGAAGAAAGACCGTACCGGAGACCAACCATGATACAAGTGATGTCGATGTTTAAAGAGCTTCAGGTTGACACTGATAATGATGTGCTTGATAGCTTCTCTCTGAAGGACAATGTTATTGATGAAGCATGA 3696 0.4591 MSWSQEQEGRGRRRRAQAQPSQVVGFVFLIASFMILTTTLTSTLTTSASATPTTNNNDDVAVVTLLTSFKTSYVSSDPYNFLSTWSAAATSPCSWRGVSCSAAGDVTTVNLTGASLTGTLHLPTLTSIPTLQNLLLRGNSFNAFNFSVSSSCSLTTLDLSATNFSGEFPFHDLTPCRGLNHLNLSRNFITGAAAQYHSRSFGPSSLLELDVSRNLFSDFSFVASAVADCGGLVMLNFSDNRVAGQLSESLVPCANLSTLDISHNLLSGKIPPRIVGDAVEVLDLSSNNFSDGFSGVDFGKCERLVWLSFSHNELSSGEFPPSLSNCKVLETVDFSHNELRLEIPGVLLGGLRSLKELFLGHNQFYGVIPMELGMACGTLEVLDLSQNKLSGELPLTFGKCFSLKSLNLAKNYLSGNFLASVVSNISSLRYLYVPFNNITGSVPLSLANCTQLQVLDLSSNAFTGNVPSGICSSLSNLEKMLLAGNYLSGEVPAELGGCKSLRTIDFSFNNLKGSIPLEVWSLPNLSDLIMWANNLSGEIPEGICVNGGNLETLILNNNFISGSIPQSIANCTNMIWVSLASNRITGGIPAGIGNLNALAILQLGNNSLTGLIPPAIGKCKTLIWLDLNSNNLTGTVPHELSNQAGLVIPGSVSGKQFAFVRNEGGTNCRGAGGLVEFEDIRVERLEGFPMVHSCPLTRIYSGLTVYTFPSNGSMIYLDLSYNFLEGSIPENLGGMAYLQVLNLGHNRLIGNIPESFGGLKAIGVLDLSHNNLQGFIPGSLESLSFLSDLDVSNNNLTGSIPSGGQLTTFPSSRYENNSNLCGVPLEPCGASNHSTGFHTLKKKQPAAEGIVIGLLLFLLVVLGLLLAFYQVKKIRRKEKKREKYIESLPTSGSSSWKLSSFPEPLSINVATFEKPLRKLTFAHLLEATNGFSAESLIGSGGFGEVYKAKLKDGCVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKWGSLEAVLHERGKGGGTGSLDWEARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNVLLDENFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKRPIDSVEFGDDNNLVGWSKKLYREKRIIEILDPDLIVQTSSESELCQYLKIAFECLEERPYRRPTMIQVMSMFKELQVDTDNDVLDSFSLKDNVIDEA* 1232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g2382 1231 Gene3D Ribonuclease Inhibitor 61 193 IPR032675 -
Lja3g2382 1231 SUPERFAMILY Protein kinase-like (PK-like) 912 1206 IPR011009 -
Lja3g2382 1231 PANTHER SERINE/THREONINE-PROTEIN KINASE BRI1-LIKE 1 53 1217 - -
Lja3g2382 1231 Pfam Brassinosteroid receptor island domain 645 708 IPR045381 -
Lja3g2382 1231 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1055 1067 IPR008271 GO:0004672|GO:0006468
Lja3g2382 1231 Pfam Leucine rich repeat 753 796 IPR001611 GO:0005515
Lja3g2382 1231 Pfam Leucine rich repeat 451 511 IPR001611 GO:0005515
Lja3g2382 1231 Gene3D Phosphorylase Kinase; domain 1 894 1006 - -
Lja3g2382 1231 Pfam Leucine rich repeat N-terminal domain 66 101 IPR013210 -
Lja3g2382 1231 Gene3D - 652 709 - -
Lja3g2382 1231 SMART LRR_typ_2 783 806 IPR003591 -
Lja3g2382 1231 SMART LRR_typ_2 595 619 IPR003591 -
Lja3g2382 1231 SMART LRR_typ_2 522 546 IPR003591 -
Lja3g2382 1231 SMART LRR_typ_2 351 374 IPR003591 -
Lja3g2382 1231 SMART LRR_typ_2 474 498 IPR003591 -
Lja3g2382 1231 SMART LRR_typ_2 735 758 IPR003591 -
Lja3g2382 1231 SMART LRR_typ_2 449 473 IPR003591 -
Lja3g2382 1231 SMART LRR_typ_2 759 782 IPR003591 -
Lja3g2382 1231 ProSiteProfiles Protein kinase domain profile. 931 1209 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2382 1231 Pfam Protein kinase domain 933 1204 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2382 1231 Pfam Leucine Rich Repeat 549 571 IPR001611 GO:0005515
Lja3g2382 1231 Pfam Leucine Rich Repeat 379 400 IPR001611 GO:0005515
Lja3g2382 1231 Gene3D Transferase(Phosphotransferase) domain 1 1007 1226 - -
Lja3g2382 1231 SUPERFAMILY L domain-like 73 415 - -
Lja3g2382 1231 SUPERFAMILY L domain-like 415 801 - -
Lja3g2382 1231 ProSitePatterns Protein kinases ATP-binding region signature. 937 960 IPR017441 GO:0005524
Lja3g2382 1231 SMART serkin_6 931 1206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lja3g2382 1231 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 53 1217 - -
Lja3g2382 1231 Gene3D Ribonuclease Inhibitor 201 829 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g2382 Lja-Chr3 29046239 29050653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja3g2382 57 1230 Receptor kinase-like Gene Family AT1G55610 62.869 0.0 1466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Lja3g2382 Pkinase 6.5e-46 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g3795 3 74793011 74797779 Lja3g2382 3 29046239 29050653 PCT