Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja3g1241 ATGTCCAAGACTATGCAACAACAACAACAACAACAACAACAGGGTTTCGATTCCCTGTGTTGCGACTACAATAAGCCCGATTCCAAACAACTCGATCTGCCCGCTTCTTCCACCGCCGTTCCTCCCAAACTCCCCACCAGCCACTCCGGCGAGCTTTCTCGCGCTTCCAGACCCGCTCACCGGAGATCGGTCTCCGCCGGAGCTCCGCTAATCTACTCCGGCGGAGCCAATGGTGGTGGAGGTTCTGGTTCTGGTTCGAGTCCGACCCTGCTTCCGACCGGGAACATTTGCCCCTCAGGGAAGATCCTCAGACCGGGTTTGCCATCTCGCGGCCCGAACCGGACAGAAGTTTTGGGTTCTGGCACCGGGAACTATGGCCGCGGTAACATAGTTCGCGGCGGCGGCGGTGGGAACTCGGTGGCGGCGGATTCACCGGTGAAGCGGGCGATGCGTGGCTATGATCCCGAGGAGGCGAAGAGGGTTGGGAACGAGATGTATAGGAGTGGGAACTTTGCGGATGCGTTGGCATTGTATGATCGTGCTGTTGCCATGTCGCCTGGGAACGCTGCTTACCGGAGTAACCGTGCGGCGGCGCTCACGGCGTTGGGGAGGTGGGGTGAGGCGGTTAGGGAATGTGAAGAGGCTGTGAAGTTGGACAATGGTTATGCTAGGGCTCATAAGAGGCTTGCTTCTCTTTATCTAAGAATCGGGCAGGTTGAGAATTCGCGGCTCCACCTGTGTCTCTCTGGGCTGCCGGAGGATCCATCGGAAGAGCAGAAGCTGTGCTTGTTGGAGAAGCAGCTGAGTCGATGTGCTGATTCACGGAAGATTGGTGATTGGAAGAGGGCACTTAGGGAATCCGAGGCAGCCATTGCTGTTGGAGCAGATTTCTCACCTCAGTTAGTTGCTTGTAAAGCTGAAGCTTATTTAAAACTCCATCAACTTGAGGATGCTGAATCCTGTGCTTCCAAAATTCCCAAGATGGAAGGTTGTCCTCCATCCTGCTCTCAAGCCAGGTTCTTCGGCATGATTGGTGAAGCCTATGTGCATTTGGTCTCCGCTCAGGTTGAAATGGCATTGGGAAGGTTTGAGAATGCTGTCACAGCAGCAGGAAAGGCTAGGCTGTTAGATTATAGTAATTACGAAGTTTCTAGGATTGTAAATACTGTGAACAGAGTGGCGCAAGCTCGTTCAAGGGGCAATGAACTTTTCAGTTCTGGAAAATTTTCTGATGCTTGTACTGCTTATGGAGAAGGCCTCAAATATGACAATTCCAACTATGTTTTATATTGCAATAGAGCTATTTGCTGGTCTAAACTTGGCCTATGGGAACAATCAGTTCAAGACTGCAACCAAGCTCTTAACATTCAGCCAAACTACACCAAAGCCCTTCTCCGCAGGGCTGCGTCAAATGCAAAGCTTGAAAGATGGGCAGAAGTTGTTAAAGATTACCAGGCCTTGAAACACGAGCTGCCTAATGACAATGATGTTGCTGTATCTCTTCATCAAGCTCAACTAGCATTGGAAAAATCTCGTGGCCTGGCCAATGGTACCAAGTTTGGAGTTGAAGTTGAAGAAATCTCTTCAGTAGATAAATTTAAATCTGCGATTGCTTCTGCTGGTGTTTCGGTAGTTTATTTCAAAGAGACATTAAATGAACAATGTGAAGAAATTTCTCCATTCATCAATACATTATGTGTTAGATATCCCTCTGTTAAATTTATTAAGGTGGACGTGGAGGAGTGTCTAGCAATAGCAAAAGTTGAAAGCATAAGAAGTGTTCCCACTTTTAAAATTTATAAAAATGGGGAGAAGGTGAAGGAGATGTTCCGCCCAACCCATCAGGCCTTAGAGGACTCAGTAAGGAAAAATATTGCATGTTCTGAGGTTAACAGCTCTGTTAGCATGGTTAATAAAGCATCACACAATGCTGACACTACATTTGGATACATTGATAGATGGGGTATCAGGCAAGAGGGAAGGAGCTGA 1989 0.4847 MSKTMQQQQQQQQQGFDSLCCDYNKPDSKQLDLPASSTAVPPKLPTSHSGELSRASRPAHRRSVSAGAPLIYSGGANGGGGSGSGSSPTLLPTGNICPSGKILRPGLPSRGPNRTEVLGSGTGNYGRGNIVRGGGGGNSVAADSPVKRAMRGYDPEEAKRVGNEMYRSGNFADALALYDRAVAMSPGNAAYRSNRAAALTALGRWGEAVRECEEAVKLDNGYARAHKRLASLYLRIGQVENSRLHLCLSGLPEDPSEEQKLCLLEKQLSRCADSRKIGDWKRALRESEAAIAVGADFSPQLVACKAEAYLKLHQLEDAESCASKIPKMEGCPPSCSQARFFGMIGEAYVHLVSAQVEMALGRFENAVTAAGKARLLDYSNYEVSRIVNTVNRVAQARSRGNELFSSGKFSDACTAYGEGLKYDNSNYVLYCNRAICWSKLGLWEQSVQDCNQALNIQPNYTKALLRRAASNAKLERWAEVVKDYQALKHELPNDNDVAVSLHQAQLALEKSRGLANGTKFGVEVEEISSVDKFKSAIASAGVSVVYFKETLNEQCEEISPFINTLCVRYPSVKFIKVDVEECLAIAKVESIRSVPTFKIYKNGEKVKEMFRPTHQALEDSVRKNIACSEVNSSVSMVNKASHNADTTFGYIDRWGIRQEGRS* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja3g1241 662 MobiDBLite consensus disorder prediction 77 143 - -
Lja3g1241 662 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN TTL4 28 623 - -
Lja3g1241 662 Pfam Thioredoxin 530 619 IPR013766 -
Lja3g1241 662 MobiDBLite consensus disorder prediction 30 53 - -
Lja3g1241 662 Gene3D Tetratricopeptide repeat domain 154 511 IPR011990 GO:0005515
Lja3g1241 662 Pfam Tetratricopeptide repeat 166 221 - -
Lja3g1241 662 SUPERFAMILY Thioredoxin-like 436 623 IPR036249 -
Lja3g1241 662 SMART tpr_5 155 188 IPR019734 GO:0005515
Lja3g1241 662 SMART tpr_5 189 222 IPR019734 GO:0005515
Lja3g1241 662 SMART tpr_5 347 380 IPR019734 GO:0005515
Lja3g1241 662 SMART tpr_5 461 494 IPR019734 GO:0005515
Lja3g1241 662 SMART tpr_5 393 426 IPR019734 GO:0005515
Lja3g1241 662 SMART tpr_5 427 460 IPR019734 GO:0005515
Lja3g1241 662 MobiDBLite consensus disorder prediction 1 19 - -
Lja3g1241 662 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 28 623 IPR044534 -
Lja3g1241 662 SUPERFAMILY TPR-like 393 497 IPR011990 GO:0005515
Lja3g1241 662 MobiDBLite consensus disorder prediction 1 63 - -
Lja3g1241 662 CDD TRX_family 533 609 - -
Lja3g1241 662 Gene3D Glutaredoxin 512 630 - -
Lja3g1241 662 SUPERFAMILY TPR-like 155 382 IPR011990 GO:0005515
Lja3g1241 662 MobiDBLite consensus disorder prediction 79 94 - -
Lja3g1241 662 ProSiteProfiles TPR repeat profile. 155 188 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja3g1241 Lja-Chr3 13025340 13030899 Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja3g1241 3 13025340 13030899 Lja3g1241 3 13025340 13030899 ECH
Lja3g4875 3 90818752 90822616 Lja3g1241 3 13025340 13030899 PCT