Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3547 AGGAAGCTTCAGAGGAAGCGAAGCTGCCCAAATTGCCGTGCTTCAACTGCATCTTCTTGTGCTTCTTACTCTACTCCAAAGTTTTTGGACTCCCTCACACAACCTGGATGGACTACTGCAATGGACCAAAAACTTATAAAGCTGGCCACAAAGGCCAAAAAAAACAAAAAAAAGTTTGCGGCGTTTGGATCTGGATCAAAGGACCCATTGAAGCAGCCAGAGGCGTGGAATCTACTGGCACAACTCTTCAACAAGGGCATCAATCACTGTGAAGTGAAAACTGCTAAAGACTTGGGCAAGAGACTTAAATTTTTGATATCAAATTATAACAATGCCACAAATGCTGGATGCAACCTGGATGGATGGGAGTTGAACAAACGACTGAGGACGTTGTTGAGCTTACGGCTGGTTATCCCGAGGTTTGTCACGGGAGGTGGGGATAGGAGCAGAAGTGGTGATACGAGCAGAAGTGGTGATTGTGCTTCTTACTCTACTCCAAAGGTTATGAATCATAATCAGTTTTTGGTCTCCCTCACACAACCTGGATGGACTACTGCAATGGACCAAAAACTTATAAAGCTGGCCACAAAGGCCAAAAAAAACAAAAAAAAGTTTGCGGCGTTTGGATCTGGATCAAAGGACCCATTGAAGCAGCCAGAGGCGTGGAATCTACTGGCACAACTCTTCAACAAGGGCATCAATCACTGTGAAGTGAAAACTGCTAAAGACTTGGGCAAGAGACTTAAATTTTTGATATCAAATTATAACAATGCCACAAATGCTGGATGCAACCTAGATGGATGGGAGTTGAACAAACGACTGAGGACGTTGTTGAGCTTACGGCTGGTTATCCCGAGGTTTGTCACGGGAGGTGGGGATAGGAGCAGAAGTGGTGATACGAGCAGAAGTGGTGATAGGAGCAAAACCCTGGAAGACCGTGGGAATGTGTTGCGTGCAAGAGAATCAGGGAAAGCTGTTCTAACTGCGCCCTTCAGGCTGCTCAAAACAAATCGTCTAGGGGTTATCCTGACATTTGCTGTCTACAAGAGAGATCTTCCATCAAATGCTACTCCAAATGAAAGAATTCAAGCAACTGATGGGTATCTTGGTGGGGTCTTTCATGTTGAGTCGTTAGTGGATAAATTACTTCAGCAACTTGCTAGCAAGCAAACTGTAAATGTTGATGTGTATGATACTACAAATCATACTCATCCGATCGCCATGTATGGCTCAAATGTATCCACGGATGCGTTCTATCATGTCAGCAGTCTTAACTTTGGAGATCCCTTCAGAAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCGCCGTGGCCATTGTTGGCAATAGCTGCTTCAATTGGCACCTTTCTTATTCCACTCCTTATTGGACAAATTTCCTATGCTACTGTGATTCAAATTGCAAAAGTAGAAGAAGATTACCGTCAGATGATGGAGCTAAAAGAACGAGCTGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTTGCTACTGTTTCCCACGAGATCAGAACACCAATGAATGGTGTTTTAGGGATGTTGCATATGCTTATGGACACAGATCTAGATGTAACCCAACAGGAATATGTCAGAACAGCGCAGGACAGTGGAAAATCACTTGTATCACTTATAAATGAGGTTTTGGACCAGGCAAAAATTGAATTTGGTAAGCTAGAGAATGAGGCTGTGCTCTTTGATGTACGGGCAATTCTGGATGATGTGTTGTCACTATTTTCTGAGAAGTCTCGAGCAAAAGGATTAGAGTTGGCAGTTTTTGTGTCAGATCAGGTTCCTGAACTGCTAATAGGTGATCCAGGAAGGTTTCGACAAATAATTACAAACCTCATGGGTAACTCAATTAAGTTCACGGACAAAGGACATGTTTTTGTCACTATCCATCTTGTTGAGGAGGTTGTCCATTCAGTAGAGGTTGACAAAGAACCGAACTCTGATAAAAATACCTTGAGTGGTTTCCCAGTGGCTGATATCCGCAAGAGCTGGGAGGGATTCAAGGCTTTCAGTCAGGAGGGACCTCTTGGTTCTTTCTCATCCTCCTCGAGCGATTTCATCAATTTGATTGTATCTGTGGAGGACACAGGTGAAGGTATTCCTCTAGAAGCCCAGTCCCGCATCTTCACTCCATTCATGCAGGTAAATCCATCCATCTCTAGAAAACATGGGGGAACTGGTATTGGCCTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGTGAAATTGGATTTGCAAGCACACCCAAGATTGGATCCACTTTCACTTTTACCGCAGTCTTCACAAATGGACTCCCCAGTTCAAATGAGTGTAAAATTCAGCAAATTAGCAATCAGCCTCAACCAGCATCTTCAGCATTTGAGGGGATGACTGCATTGGTTATTGACCCGAGAACCGTTCGCGCAAAAGTGTCTAGATATCACATCCAACGGCTTGGCATTCATGTTGAATTCGTTTCAGATTTAAACCAAGGGTTGTCAACCATAGGCAATGGGAGCATAGTTACCAATATGGTCCTGATTGAGGAGGCGGTCTGGGACAGAGATTCAGGCATGTCATCTCACTTTGTCAAGAACACAAGGAAAGTTGATAATGGGGTTCCTCCAAAGCTGTTTATTCTTGTTAATTCTAGTAATTCTTCTAAAGCAAGTAGTGTAGCCTCTGATGTTCATTATCCTACTGTCATCACAAAACCTCTCAGAGCAAGCATGCTTGCTGTCACGCTACAACGAGCCATGGGTGTTAGGAACAAGGGTACTCCTCCAAATAGGGAACTCCAAAGGATTTCTCTTCGCCAACTTCTTCTCGGGAGGAAGATTCTAATCGTAGACGACAATAGTGTGAACCGTGCAGTAGCAGCCGGTGCTTTGAAGAAGTATGGAGCAACTGTGGTTTGTGTTAGCAGTGGGCAAGATGCCATCTCTTCACTGACACCACCCCATCAGTTTGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGATGGTTTTGAAGCTACAAGGAGAATTAGAGAGATGGAACACAATGTGAACAGAGAAGTGTCTATGGATGGCTTTGAGAATGTTTCGAACTGGCATGTGCCCATTTTAGCTATGACTGCAGATGTGATCCAGGCTACACATGAGGAATGCCTAAGGTATGGCATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTTTATAGAGAAGTTTCTAGATTTTACCCGTCATCTGAAAAAAAAAAACAGTGCTGA 3273 0.4372 RKLQRKRSCPNCRASTASSCASYSTPKFLDSLTQPGWTTAMDQKLIKLATKAKKNKKKFAAFGSGSKDPLKQPEAWNLLAQLFNKGINHCEVKTAKDLGKRLKFLISNYNNATNAGCNLDGWELNKRLRTLLSLRLVIPRFVTGGGDRSRSGDTSRSGDCASYSTPKVMNHNQFLVSLTQPGWTTAMDQKLIKLATKAKKNKKKFAAFGSGSKDPLKQPEAWNLLAQLFNKGINHCEVKTAKDLGKRLKFLISNYNNATNAGCNLDGWELNKRLRTLLSLRLVIPRFVTGGGDRSRSGDTSRSGDRSKTLEDRGNVLRARESGKAVLTAPFRLLKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFHVESLVDKLLQQLASKQTVNVDVYDTTNHTHPIAMYGSNVSTDAFYHVSSLNFGDPFRKHEMHCRFKQKPPWPLLAIAASIGTFLIPLLIGQISYATVIQIAKVEEDYRQMMELKERAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQDSGKSLVSLINEVLDQAKIEFGKLENEAVLFDVRAILDDVLSLFSEKSRAKGLELAVFVSDQVPELLIGDPGRFRQIITNLMGNSIKFTDKGHVFVTIHLVEEVVHSVEVDKEPNSDKNTLSGFPVADIRKSWEGFKAFSQEGPLGSFSSSSSDFINLIVSVEDTGEGIPLEAQSRIFTPFMQVNPSISRKHGGTGIGLSISKCLVGLMNGEIGFASTPKIGSTFTFTAVFTNGLPSSNECKIQQISNQPQPASSAFEGMTALVIDPRTVRAKVSRYHIQRLGIHVEFVSDLNQGLSTIGNGSIVTNMVLIEEAVWDRDSGMSSHFVKNTRKVDNGVPPKLFILVNSSNSSKASSVASDVHYPTVITKPLRASMLAVTLQRAMGVRNKGTPPNRELQRISLRQLLLGRKILIVDDNSVNRAVAAGALKKYGATVVCVSSGQDAISSLTPPHQFDACFMDIQMPEMDGFEATRRIREMEHNVNREVSMDGFENVSNWHVPILAMTADVIQATHEECLRYGMDGYVSKPFEAEQLYREVSRFYPSSEKKKQC* 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3547 1090 MobiDBLite consensus disorder prediction 298 312 - -
Lja2g3547 1090 PANTHER HISTIDINE KINASE 3 309 1083 - -
Lja2g3547 1090 MobiDBLite consensus disorder prediction 148 164 - -
Lja2g3547 1090 SMART HKATPase_4 609 773 IPR003594 -
Lja2g3547 1090 ProSiteProfiles Response regulatory domain profile. 949 1081 IPR001789 GO:0000160
Lja2g3547 1090 CDD HATPase_EvgS-ArcB-TorS-like 614 771 - -
Lja2g3547 1090 Pfam His Kinase A (phospho-acceptor) domain 497 560 IPR003661 GO:0000155|GO:0007165
Lja2g3547 1090 SMART HisKA_10 497 562 IPR003661 GO:0000155|GO:0007165
Lja2g3547 1090 Gene3D - 561 773 IPR036890 -
Lja2g3547 1090 PANTHER TWO-COMPONENT HISTIDINE KINASE 309 1083 - -
Lja2g3547 1090 ProSiteProfiles CHASE domain profile. 305 436 IPR006189 -
Lja2g3547 1090 Pfam CHASE domain 311 409 IPR006189 -
Lja2g3547 1090 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 551 768 IPR036890 -
Lja2g3547 1090 Pfam Response regulator receiver domain 950 1076 IPR001789 GO:0000160
Lja2g3547 1090 ProSiteProfiles Histidine kinase domain profile. 504 773 IPR005467 -
Lja2g3547 1090 Coils Coil 474 494 - -
Lja2g3547 1090 Gene3D - 467 560 - -
Lja2g3547 1090 CDD PRTases_typeI 903 977 IPR000836 -
Lja2g3547 1090 PRINTS Bacterial sensor protein C-terminal signature 698 712 IPR004358 GO:0016310|GO:0016772
Lja2g3547 1090 PRINTS Bacterial sensor protein C-terminal signature 716 726 IPR004358 GO:0016310|GO:0016772
Lja2g3547 1090 PRINTS Bacterial sensor protein C-terminal signature 757 770 IPR004358 GO:0016310|GO:0016772
Lja2g3547 1090 PRINTS Bacterial sensor protein C-terminal signature 733 751 IPR004358 GO:0016310|GO:0016772
Lja2g3547 1090 MobiDBLite consensus disorder prediction 145 164 - -
Lja2g3547 1090 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 483 563 IPR036097 GO:0000155|GO:0007165
Lja2g3547 1090 SMART REC_2 948 1077 IPR001789 GO:0000160
Lja2g3547 1090 Gene3D CHASE domain 304 443 IPR042240 -
Lja2g3547 1090 CDD REC_hyHK_CKI1_RcsC-like 950 1077 - -
Lja2g3547 1090 Gene3D - 945 1085 - -
Lja2g3547 1090 SUPERFAMILY CheY-like 797 925 IPR011006 -
Lja2g3547 1090 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 609 771 IPR003594 -
Lja2g3547 1090 SMART CHASE_2 259 411 IPR006189 -
Lja2g3547 1090 MobiDBLite consensus disorder prediction 291 312 - -
Lja2g3547 1090 SUPERFAMILY CheY-like 947 1080 IPR011006 -
Lja2g3547 1090 CDD HisKA 497 558 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3547 Lja-Chr2 85209373 85217252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3547 311 1083 Miscellaneous Gene Families AT1G27320 67.224 0.0 1040
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja2g3547 HATPase_c 2.8e-29 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3547 2 85209373 85217252 Lja2g3547 2 85209373 85217252 ECH