Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3536 ATGGACACTGTGGAGCAGAACCCAGTTCATAAGGATGATTATGCCCCAGAAAAATTGGAGCCATCCCCCATTCAGGAAGAATATGCTCCTGTCAAATTTGCTCAAGATACGGTTTCACATGTCATTTCTGTTGACGTGCTTTCTGGAAAGGAAGACCGTGGGAATGTGTTGCGTGCAAGAGAATCAGGGAAAGCTGTTCTAACTGCGCCCTTCAGGCTGCTCAAAACAAATCGTCTAGGGGTTATCCTGACATTTGCTGTCTACAAGAGCGATCTTCCATCAAATGCTACTCCAAATGAAAGAGTTCAAGCAACTGATGGGTATCTTGGTGGGGTCTTTCATGTTGAGTCGTTAGTGGATAAATTACTTCAGCAACTTGCTAGCAAGCAAACTGTAAATGTTGATGTGTATGATACTACAAATCATACTCATCCGATCGCCATGTATGGCTCAAATGTATCCACGGATGCGTTCTATCATGTCAGCAGTCTTAACTTTGGAGATCCCTTCAGAAAGCATGAGATGCACTGCAGGTTCAAACAGAAACCGCCGTGGCCATTGTTGGCAATAGCTGCTTCAATTGGCGCCTTTCTTATTCCACTCCTTATTGGACAAATTTCCTATGCTACTGTGATTCAAATTGCAAAAGTAGAAGAAGATTACCGTCAGATGATGGAGCTAAAAGAACGAGCTGAGGCAGCTGATGTTGCAAAATCCCAGTTTCTTGCTACTGTTTCCCACGAGATCAGAACACCAATGAATGGTGTTTTAGGGATGTTGCATATGCTTATGGACACAGATCTAGATGTAACCCAACAGGAATATGTCAGAACAGCGCAGGACAGTGGAAAATCACTTGTATCACTTATAAATGAGGTTTTGGACCAGGCAAAAATTGAATTTGGTAAGCTAGAGAATGAGGCTGTGCTCTTTGATGTACGGGCAATTCTGGATGATGTGTTGTCACTATTTTCTGAGAAGTCTCGAGCAAAAGGATTAGAGTTGGCAGTTTTTGTGTCAGATCAGGTTCCTGAACTGCTAATAGGTGATCCAGGAAGGTTTCGACAAATAATTACAAACCTCATGGGTAACTCAATTAAGTTCACGGACAAAGGACATGTTTTTGTCACTATTCATCTTGTTGAGGAGGTTGTCCATTCAGTAGAGGTTGACAAAGAACCAAACTCTGATAAAAATACCTTGAGTGGTTTCCCAGTGGCTGATATCCGCAAGAGCTGGGAGGGATTCAAGGCTTTCAGTCAGGAGGGACCTCTTGGTTCTTTCTCATCCTCCTCGAGCGATTTCATCAATTTGATTGTATCTGTGGAGGACACAGGTGAAGGTATTCCTCTAGAAGCCCAGTCCCGCATCTTCACTCCGTTCATGCAGGTAAATCCATCCATCTCTAGAAAACATGGGGGAACTGGTATTGGCCTAAGCATTAGCAAGTGTTTGGTTGGCCTCATGAATGGTGAAATTGGATTTGCAAGCACACCCAAGATTGGATCCACTTTCACTTTTACCGCAGTCTTCACCAATGGACTCCCCAGTTCAAATGAGTGTAAAATTCAGCAAATTAGCAACCAGCCTCAACCAGCATCTTCAGCATTTGAGGGGATGACTGCATTGGTTATTGACCCGAGAACCGTTCGCGCAAAAGTGTCTAGATATCACATCCAACGGCTTGGCATTCATGTTGAATTCGTTTCAGATTTAAACCAAGGGTTGTCAACCATAGGCAATGGGAGCATAGTTACCAATATGGTCCTGATTGAGGAGGCGGTCTGGGACAGAGATTCAGGCATGTCATCTCACTTTGTCAAGAACACAAGGAAAGTTGATAATGGGGTTCCTCCAAAGCTGTTTATTCTTGTTAATTCTAGTAATTCTTCTAAAGCAAGTAGTGTAGCCTCTGATGTTCATTATCCTACTGTCATCACAAAACCTCTCAGAGCAAGCATGCTTGCTGTCACGCTACAACGAGCCATAGGTGTTAGGAACAAGGGTACTCCTCCAAATAGGGAACTCGAAAGGTTTTCTCTTCGCCAACTTCTTCTCGGGAGGAAGATTCTAATCGTAGACGACAATAGTGTGAACCGTGCAGTAGCAGCCGGTGCTTTGAAGAAGTATGGAGCAACTGTGGTTTGTGTTAGCAATGGGCAAGATGCCATCTCTTCACTGACACCACCCCATCAGTTTGATGCCTGTTTCATGGATATTCAAATGCCAGAAATGGATGGTTTTGAAGCTACAAGGAGAATTAGAGAGATGGAACACAATGTGAACAGAGAAGTGTCTATGGATGGCTTTGAGAATGTTTCGAACTGGCATGTGCCCATTTTAGCTATGACTGCAAATGTGATCCAGGCTACACATGAGGAATGCCTAAGGTATGGCATGGATGGATATGTTTCAAAACCATTTGAAGCTGAACAGCTTTATAGAGAAGTTTCTAGATTTTACCCGTCATCTGAAAAAAAAAAACAGTGCTGA 2493 0.4328 MDTVEQNPVHKDDYAPEKLEPSPIQEEYAPVKFAQDTVSHVISVDVLSGKEDRGNVLRARESGKAVLTAPFRLLKTNRLGVILTFAVYKSDLPSNATPNERVQATDGYLGGVFHVESLVDKLLQQLASKQTVNVDVYDTTNHTHPIAMYGSNVSTDAFYHVSSLNFGDPFRKHEMHCRFKQKPPWPLLAIAASIGAFLIPLLIGQISYATVIQIAKVEEDYRQMMELKERAEAADVAKSQFLATVSHEIRTPMNGVLGMLHMLMDTDLDVTQQEYVRTAQDSGKSLVSLINEVLDQAKIEFGKLENEAVLFDVRAILDDVLSLFSEKSRAKGLELAVFVSDQVPELLIGDPGRFRQIITNLMGNSIKFTDKGHVFVTIHLVEEVVHSVEVDKEPNSDKNTLSGFPVADIRKSWEGFKAFSQEGPLGSFSSSSSDFINLIVSVEDTGEGIPLEAQSRIFTPFMQVNPSISRKHGGTGIGLSISKCLVGLMNGEIGFASTPKIGSTFTFTAVFTNGLPSSNECKIQQISNQPQPASSAFEGMTALVIDPRTVRAKVSRYHIQRLGIHVEFVSDLNQGLSTIGNGSIVTNMVLIEEAVWDRDSGMSSHFVKNTRKVDNGVPPKLFILVNSSNSSKASSVASDVHYPTVITKPLRASMLAVTLQRAIGVRNKGTPPNRELERFSLRQLLLGRKILIVDDNSVNRAVAAGALKKYGATVVCVSNGQDAISSLTPPHQFDACFMDIQMPEMDGFEATRRIREMEHNVNREVSMDGFENVSNWHVPILAMTANVIQATHEECLRYGMDGYVSKPFEAEQLYREVSRFYPSSEKKKQC* 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3536 830 CDD PRTases_typeI 643 717 IPR000836 -
Lja2g3536 830 SUPERFAMILY CheY-like 687 820 IPR011006 -
Lja2g3536 830 Gene3D - 301 513 IPR036890 -
Lja2g3536 830 CDD HATPase_EvgS-ArcB-TorS-like 354 511 - -
Lja2g3536 830 ProSiteProfiles Histidine kinase domain profile. 244 513 IPR005467 -
Lja2g3536 830 SMART CHASE_2 1 151 IPR006189 -
Lja2g3536 830 SMART REC_2 688 817 IPR001789 GO:0000160
Lja2g3536 830 CDD HisKA 237 298 IPR003661 GO:0000155|GO:0007165
Lja2g3536 830 Gene3D CHASE domain 3 183 IPR042240 -
Lja2g3536 830 MobiDBLite consensus disorder prediction 1 21 - -
Lja2g3536 830 CDD REC_hyHK_CKI1_RcsC-like 690 817 - -
Lja2g3536 830 Pfam CHASE domain 18 149 IPR006189 -
Lja2g3536 830 Coils Coil 214 234 - -
Lja2g3536 830 MobiDBLite consensus disorder prediction 1 20 - -
Lja2g3536 830 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 291 508 IPR036890 -
Lja2g3536 830 Pfam Response regulator receiver domain 690 816 IPR001789 GO:0000160
Lja2g3536 830 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 823 - -
Lja2g3536 830 Pfam His Kinase A (phospho-acceptor) domain 237 300 IPR003661 GO:0000155|GO:0007165
Lja2g3536 830 SMART HisKA_10 237 302 IPR003661 GO:0000155|GO:0007165
Lja2g3536 830 SUPERFAMILY CheY-like 537 665 IPR011006 -
Lja2g3536 830 SMART HKATPase_4 349 513 IPR003594 -
Lja2g3536 830 PANTHER HISTIDINE KINASE 3 1 823 - -
Lja2g3536 830 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 349 511 IPR003594 -
Lja2g3536 830 PRINTS Bacterial sensor protein C-terminal signature 438 452 IPR004358 GO:0016310|GO:0016772
Lja2g3536 830 PRINTS Bacterial sensor protein C-terminal signature 456 466 IPR004358 GO:0016310|GO:0016772
Lja2g3536 830 PRINTS Bacterial sensor protein C-terminal signature 497 510 IPR004358 GO:0016310|GO:0016772
Lja2g3536 830 PRINTS Bacterial sensor protein C-terminal signature 473 491 IPR004358 GO:0016310|GO:0016772
Lja2g3536 830 ProSiteProfiles CHASE domain profile. 1 176 IPR006189 -
Lja2g3536 830 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 223 303 IPR036097 GO:0000155|GO:0007165
Lja2g3536 830 Gene3D - 207 300 - -
Lja2g3536 830 ProSiteProfiles Response regulatory domain profile. 689 821 IPR001789 GO:0000160
Lja2g3536 830 Gene3D - 685 825 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3536 Lja-Chr2 84321237 84325925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3536 1 823 Miscellaneous Gene Families AT1G27320 67.229 0.0 1116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lja2g3536 HATPase_c 1.8e-29 CL0025
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3536 2 84321237 84325925 Lja2g3536 2 84321237 84325925 ECH