Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3355 ATGGGTGAGGGCCATATGGGGTTCATGTTCTGTTTTTCTCTCCTTCTTGTTCTGTCTTCTGGGTCATCCAGAAACTTGCCCATCATAGCCTTTGAGGAAGGGTATACACACTTGTTTGGGGACAATAACTTGATCATCCATGAGGATGGGAAATCGGTTCATCTTTCACTTGATGAGAGAACAGGCTCTGGATTTGTGTCTCATGATCTTTACCTGCATGGGTTTTTCAGTGCTTCGATTAAGTTGCCTGCTGATTACACTGCTGGGGTTGTGGTTGCATTTTATATGTCAAATGGTGACATGTACGAGAAGAACCATGATGAAATCGATTTTGAGTTTTTGGGAAACATTAGAGGCAAAAACTGGAGGGTTCAGACCAATGTTTATGGCAATGGAAGTACCAATATTGGTAGAGAAGAAAGATTTGGTCTGTGGTTTGATCCTTCTGAAGATTTCCACCAGTACAGTATTCTCTGGACAGATTCTAAGATCATATTTTATGTAGATAATGTTCCTATGAGAGAAGTTGAGAGAACAGAATCCATGGGAGGGGATTTTCCCTCAAAGCCAATGAATTTGTATGCCACCATATGGGATGCATCTGATTGGGCCACCAATGGAGGCAAATACAGAGTAAATTACAAATATGCACCCTATGTTGCTCACTTCTCTGACCTTGTCCTGCATGGCTGTGCAGTTGATCCTATTGAGCATGTAACCAAGTGTGACATTGCTCAAACCTCTGATGCAGTTCCTTCTGGTACCATCACCCCATCACAAAGAGTCAAAATGGAGAAGTTTAGGTTGAAGCACATGACTTACTCTTACTGTTATGACAGAATCAGATATAAAGCTTCTCCACCAGAGTGTGTGATCAATCCCAAACAAGCTGAGAGGCTAAGAAAATTTGATCCTGTCACATTTGGTAATGGCAGAAACCACCATGGAAAAAGACACCACCATAGCAGAGGCAACCAAGCTGAGGCTGTTTCATTTTAA 999 0.4194 MGEGHMGFMFCFSLLLVLSSGSSRNLPIIAFEEGYTHLFGDNNLIIHEDGKSVHLSLDERTGSGFVSHDLYLHGFFSASIKLPADYTAGVVVAFYMSNGDMYEKNHDEIDFEFLGNIRGKNWRVQTNVYGNGSTNIGREERFGLWFDPSEDFHQYSILWTDSKIIFYVDNVPMREVERTESMGGDFPSKPMNLYATIWDASDWATNGGKYRVNYKYAPYVAHFSDLVLHGCAVDPIEHVTKCDIAQTSDAVPSGTITPSQRVKMEKFRLKHMTYSYCYDRIRYKASPPECVINPKQAERLRKFDPVTFGNGRNHHGKRHHHSRGNQAEAVSF* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3355 332 CDD GH16_XET 29 290 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lja2g3355 332 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 27-RELATED 7 311 - -
Lja2g3355 332 MobiDBLite consensus disorder prediction 308 332 - -
Lja2g3355 332 SUPERFAMILY Concanavalin A-like lectins/glucanases 30 294 IPR013320 -
Lja2g3355 332 Pfam Xyloglucan endo-transglycosylase (XET) C-terminus 254 290 IPR010713 GO:0005618|GO:0006073|GO:0016762|GO:0048046
Lja2g3355 332 PANTHER XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE PROTEIN 8-RELATED 7 311 IPR044791 GO:0004553
Lja2g3355 332 PIRSF EndGlu_transf 4 295 IPR016455 GO:0010411|GO:0016762|GO:0042546
Lja2g3355 332 Pfam Glycosyl hydrolases family 16 33 215 IPR000757 GO:0004553|GO:0005975
Lja2g3355 332 Gene3D - 19 290 - -
Lja2g3355 332 ProSiteProfiles Glycosyl hydrolases family 16 (GH16) domain profile. 21 223 IPR000757 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3355 Lja-Chr2 76318233 76321465 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3355 8 331 Glycoside Hydrolase AT1G14720 67.692 5.26e-169 471
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3355 2 76318233 76321465 Lja2g3355 2 76318233 76321465 ECH