Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3350 ATGATTGGAGGAGGTAAAGATCTTCTTCCCAATGGTGTTGACTCTGATGGGGATAACTCAAAGAGCAAAGGGTCACAGCACCATGATTTTGAATACCAAAAGGAGAAAAAACCAGAGAAAGGTGTTGATTATCTGAAAAATTCAGATGTTGGTGTTAATGGGTTTCAGTCAATTTCCACAAAGGTTGGGAATTCTGGGTTGCAAGAGTTGACCTTCAGCTACCTCTGTGATAACCAAAAATTGGGCCTTGCTGAGAAAGACAAAGATAGAAGCCTGCTGAATTCATTGGAGAAAGGGACTTACAAAGGTAAAGAAGTTGTTGTTTCTGAAAATTCCAATCAGGATGAGAAATGGGTAGAAAGAGATTTTCTTAGTTTGAGTGAAACTAGGGAGAATTCTTCAAAGAGAATCATTGAGGAAAAGTGTGTAAGGGAAGAAGATAAGGGGAAGAAGCAAAAGCTTGAGACGCTTAATCTCTCTCTTGCTTTGCCTGATGTGGCACTTTCTCTCACAGCTTCAAAAAATGGGGATGGTCAAAAACCTTTTAGGCCAAAACCTAGCAAGCCTTCAACTACTACAATCAATTCATGTTCAAATGATTACACAGCAGCTTCTTTGTCACACTCTTATTCTCACCCTTTTTCACACAACCCAAGTTGCTCATTTACCCGTAATTCGACAGAGAATTTTGAGTATTCACTCAGCAAAGATAATCCAATTTGGTACTGCGGGGAAGGGACTAATGGATCAGTTCATAGCAGGTTCAAGCCAATAGGAGATGGGGTTGCTTTGGCCAATCATGGTGGTGGGACTAGTCAGTTTAAAGCTACTAGTTCTGATAATAACCATTCGATTTTCCCCTCAGAATTGCCTGCTAGGCCTAGATTTGAAGCTCAACAATCAGAGGGCTCAAGGGGCAAGAATTCTGAGAATCTGAGAGAAATTGGGAAGATTTCTAGACCTGAGAGAATTCTAAGAGAAATTGTTTCTGAGTCAATTCCCGCCATGGCACTAACATTTCAGGAGTTCACTGATGATGTGGTGGCATCAATTAAGGAGTATTTGAAAAACCTCATTGAAATTCCAGGTGGGAAAGAAGAATTTGTGAACCTTCGGAACCGGCTTGAGAGAAGATCTGACCTTACCAAAGAAGCTCTTTTGAAGTGCCATAAAGAGCAATTGGAGATTTTAACTGCCATCAAGATGCGGCTTGGAAGTTTCTTATCAGGTAAGTTTCAATTCTCTGACATGGTGGAGGTTTTCTTGTTTATGAGATGTAGAAACTTGAACTGCAAGAGCTTGCTTCCTGTTGATGACTGTGACTGCAAGATTTGCTCTGGAAATAAGGGATTTTGCAGTTCTTGCATGTGTCCTGTTTGTTTGAGCTTTGATTGTGCAAGTAATACTTGTAGTTGGGTTGGTTGTGATGTTTGTTCCCACTGGTGTCATGCTGCCTGTGCCATTGAGAGGAATCTAATCAAACCCGGGCCAAGCTTGAAGGGTCCTTCAGGGACCTTTGAGATGCAGTTTCATTGTGTTGGCTGTGGACACCCTTCAGAAATGTTCGGGTTCGTTAAAGAAGTCTTTCTGTGCTTTGCTAAGGATTGGAGCCTAGAAACGTTGATGAAAGAGCTTGACTGTGTAAGGAAGATTTTCCGCCCAAGCAAAGATCGCAAAGGGAAGGAATTGCACATCAAGACAGATGATATGTTGTTGAAGCTTCAAGCTAAACTGGTATCTCCTCGTGACGCCTGCAAGTACATCATACATTTTTTCAGCTATGCGGATGCCTTGTCCGACATTTCTTCTTCTGGTATATCTTCAAAGGATTTGTCAGCATCTCAGGCTAACCTCACAATGGAGGCACCACCATTTTCACAATCTACTTCTCTAAAATATACTTATGAGTTGAGTCATTCTAAGTCAAATGATCTCCATCAGAAAGACTTCAAAGCCTCAATGTCAAGTGGACTGAAAAATGAGACTGATTTTGACTTGGATGATTTGTTAAGGAAAGGTGGGCTTGAAAGCTTGGAGAGCATTGTGAGGATAAAGGAGGCAGAAGCCAGAATGTTCCAGACCAAGGCAGATGAAGCGAGGAGAGAGGCAGAAGGGTTCCATAGGATGATCAAGACAAAGGCAGCGCAAGTGGAAGAAGAGTATGCTGAACAGCTTGGAAAACTGAGTTTGCAAGAGACGGAGGAAAGGCGGAGGAAGAAATTAGAGGAGCTCAACATGTTGAAAAATTCCCATTTTGATTACTTCAAAATGAAAATGAGAATGCAAGATGAGATTGATAGTTTGTTGAAGAGAATGGAGGTAACAAAGTAG 2331 0.4148 MIGGGKDLLPNGVDSDGDNSKSKGSQHHDFEYQKEKKPEKGVDYLKNSDVGVNGFQSISTKVGNSGLQELTFSYLCDNQKLGLAEKDKDRSLLNSLEKGTYKGKEVVVSENSNQDEKWVERDFLSLSETRENSSKRIIEEKCVREEDKGKKQKLETLNLSLALPDVALSLTASKNGDGQKPFRPKPSKPSTTTINSCSNDYTAASLSHSYSHPFSHNPSCSFTRNSTENFEYSLSKDNPIWYCGEGTNGSVHSRFKPIGDGVALANHGGGTSQFKATSSDNNHSIFPSELPARPRFEAQQSEGSRGKNSENLREIGKISRPERILREIVSESIPAMALTFQEFTDDVVASIKEYLKNLIEIPGGKEEFVNLRNRLERRSDLTKEALLKCHKEQLEILTAIKMRLGSFLSGKFQFSDMVEVFLFMRCRNLNCKSLLPVDDCDCKICSGNKGFCSSCMCPVCLSFDCASNTCSWVGCDVCSHWCHAACAIERNLIKPGPSLKGPSGTFEMQFHCVGCGHPSEMFGFVKEVFLCFAKDWSLETLMKELDCVRKIFRPSKDRKGKELHIKTDDMLLKLQAKLVSPRDACKYIIHFFSYADALSDISSSGISSKDLSASQANLTMEAPPFSQSTSLKYTYELSHSKSNDLHQKDFKASMSSGLKNETDFDLDDLLRKGGLESLESIVRIKEAEARMFQTKADEARREAEGFHRMIKTKAAQVEEEYAEQLGKLSLQETEERRRKKLEELNMLKNSHFDYFKMKMRMQDEIDSLLKRMEVTK* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3350 776 MobiDBLite consensus disorder prediction 172 194 - -
Lja2g3350 776 MobiDBLite consensus disorder prediction 1 46 - -
Lja2g3350 776 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 339 361 IPR004082 -
Lja2g3350 776 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 417 438 IPR004082 -
Lja2g3350 776 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 536 555 IPR004082 -
Lja2g3350 776 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 378 393 IPR004082 -
Lja2g3350 776 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 715 737 IPR004082 -
Lja2g3350 776 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 463 483 IPR004082 -
Lja2g3350 776 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 676 696 IPR004082 -
Lja2g3350 776 PANTHER PROTEIN OBERON 3 20 776 - -
Lja2g3350 776 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 20 776 IPR004082 -
Lja2g3350 776 CDD PHD_OBE1_like 456 515 - -
Lja2g3350 776 Pfam PHD - plant homeodomain finger protein 426 550 IPR032881 -
Lja2g3350 776 MobiDBLite consensus disorder prediction 20 44 - -
Lja2g3350 776 Pfam Coiled-coil region of Oberon 650 769 IPR032535 -
Lja2g3350 776 Coils Coil 730 750 - -
Lja2g3350 776 Coils Coil 682 702 - -
Lja2g3350 776 MobiDBLite consensus disorder prediction 273 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3350 Lja-Chr2 76049527 76053100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3350 426 553 PHD Gene Family AT5G57380 25.000 3.89e-08 55.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3350 2 76049527 76053100 Lja2g3350 2 76049527 76053100 ECH