Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3346 ATGATGACTCCAAACTTGAAGCTGGAAGCTGAAAATAATTTAGAAGGAAGAAGCCAAGTAGGTTCCAATAACAGTGCCACCACTTCTGATGCTGATCCAAGTTCTGTTTCCCTTGACTTGACCCTCAACTTCAGTCCCAGTGATGAAATTGAAGAGTTGAAAGACACAAATGACACTAACAGTGAAGTGGGAGCTGAGGATCATGCATCTTCACTACCTTCAATTCATAGAATTTTCTCTTGTAATTACTGTAGGAGGAAATTCTTTAGCTCACAGGCATTAGGTGGCCATCAAAATGCTCATAAAAGGGAGAGGACAATGGCTAAGCGCGCGATGCGAATGGGAATGTTCACTGAAAGGTATACAAGCCTAGCATCTCTGCCACTCCATGGTTCTAATTTCCGGTCTCTCGGTATCGAAGCTCATTCTGCAATGCACCAAAGACACATGGCATCATCATCATTGAGGGTTCCTGATATGAGAGGTGCAGCAAGATTTGAGAAAGACTACTGTTTCGGGACACCAATGTTCATGCAAGATGGTGATGTTGGTCTGTTTTGGCCTGGAAGTTTCAGGCAGATAGATGCAAGGGCTGGTGTTAATTTGGGGCATGAACATGAACAACATGCTCATAATTCAAGTCCTAGTTTTGTAGAAACTACACCTCCTGCACAGACATCTACATCTCCTGATCTCACTCTGAGGCTTTAA 711 0.4332 MMTPNLKLEAENNLEGRSQVGSNNSATTSDADPSSVSLDLTLNFSPSDEIEELKDTNDTNSEVGAEDHASSLPSIHRIFSCNYCRRKFFSSQALGGHQNAHKRERTMAKRAMRMGMFTERYTSLASLPLHGSNFRSLGIEAHSAMHQRHMASSSLRVPDMRGAARFEKDYCFGTPMFMQDGDVGLFWPGSFRQIDARAGVNLGHEHEQHAHNSSPSFVETTPPAQTSTSPDLTLRL* 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3346 236 PANTHER ZINC FINGER PROTEIN JAGGED 17 236 IPR045320 GO:0003700
Lja2g3346 236 SUPERFAMILY beta-beta-alpha zinc fingers 77 107 IPR036236 -
Lja2g3346 236 MobiDBLite consensus disorder prediction 15 39 - -
Lja2g3346 236 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
Lja2g3346 236 Gene3D Classic Zinc Finger 59 126 - -
Lja2g3346 236 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Lja2g3346 236 MobiDBLite consensus disorder prediction 213 236 - -
Lja2g3346 236 MobiDBLite consensus disorder prediction 204 236 - -
Lja2g3346 236 PANTHER ZINC FINGER PROTEIN 3-RELATED 17 236 - -
Lja2g3346 236 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3346 Lja-Chr2 75965089 75970194 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3346 66 236 C2H2 Transcription Factor Family AT1G66140 43.147 4.21e-39 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lja2g3346 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3346 2 75965089 75970194 Lja2g3346 2 75965089 75970194 ECH