LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lja2g3327	ATGGGTTTTCGGTTTTCTCTGGTTCATCTTCTTCACCTTGTTCTGTTGTTGTTTTCTTTGATGTTTCTGCCTCGTGCATGTCCTCAAGATGCTGTTGTGATGAACACGCTCAAGAAGGCGATAACTTCAAGCTCTGGTCTAAAATGGTCAGACCCTGATGTCTGTAACTGGAATCATGTTCAGTGCAATTCGAACAAGAGGGTCACTGCAATTCAAATCGGGTATCTCAACCTTGAAGGGTCTTTGCCGAAGGAACTGGTTCAGCTCACTGAGTTAACTCGCTTTGAGTGTATGCAAAATGGCTTCACTGGGCCGTTTCCTTACATGCCCAAATCTTTGGAGATTCTGATCATTCATGACAACAATTTCAGTTCCATTCCATTTGATTTCTTCAGCAACATGACCAATTTGCAGGAGGTGAGGATTGACTACAACGATTTTCCTCAATGGCAGGTTCCTTCTAGCCTCAAAGATTGTGTTGCTCTTCAGCAATTTTCTGCAATGAGAGCTGGTTTTGTTGGGGGAATCCCAGAATTCTTTGGGAAAGATGGTCCTTTTCCAGGTTTGGTTTTCTTGGGGTTGTGTTTTAATTCTTTTGAAGGTGGGTTGCCTGCAAGCTTTTCTGGGAGTTCTATAGAGAATCTTTTGGTGAATGGTCAGATGGGTAACTCTAAGCTCAATGGATCACTTTCTGTGTTGCAGAACATGACTTCGTTGAAACAAATTTGGGTGCATGGTAATTCATTTACAGGTCCTATACCAGATTTGTCAAACCATGATCAACTTTTTGATGTGAGCTTGAGGGATAACCAGTTAACTGGTGTTGTTCCACCCTCTCTCACTGATCTTCCTGCTTTGAAGGTTGTGAATTTGACCAATAATTATCTTCAAGGGTCTCCTCCCAAGTTCAAAGATGGGGTTAGGGTTGATAATGATATGGATAGGGGGAACAATAGATTTTGCACAAAGGTTGTTGGTCAGCCATGTAGTCCCCTTGTGAATGTTTTGCTTTCTGTTGTTGAACCTTTGGGGTATCCTTTAAAACTTGCTGAAAATTGGGAGGGTAATGACCCTTGTGGTAAACAATGGATGGGGATTGTCTGTGCTGGGGGTAATATTTCCATTATCAATTTTCAGAACATGGGTCTATCTGGCAACATTTCTCCTGGTTTTGCCCAACTTACATCTGTGACAAAGTTGTTTCTTGCTAACAATGATCTCACAGGTACTATACCAAGTGAACTTACTAGTATGCCTCTTCTGAAACAGCTAGATGTTTCCAACAATAAGTTATATGGTCAGGTACCATCCTTCCGAGCAGATGTGGTTTTGAAGACTGGTGGGAATCCTGATATTGGAAAGGACAAACCTCAAGGGCCGCCTGGCTCTGGAGGTAAAGATAAGAAACATGGTGCTGGAGCTATTGTTGGGATTGCTGTAGGGGGTGTCAGCTTGCTTGGTATAGGGGTTCTGGGAGTTGTTATTTATGGTAGAAAGCATAAAAAGCGTCCTGCTGGAAAACTTCAAAGTCCAAATGCAATTGTGGTACATCCTCGTCATTCTGGAGACGGAAATGGTTTGAAGATAAGTGTTGCCGCAGCGAGTGGTAGTGGTGGGGGAACTAGTACTGGTGGATTTAGTCCAGCTACTAGTGTTCAAACTGTGGAAGCTGGTAACATGGTCATTTCAATTCAAGTTTTGAGAGAAGTCACAAACAATTTCAGTGAAGAAAACATATTGGGGAGGGGCGGGTTTGGCACGGTGTACAAAGGAGAATTGCATGATGGAACAAAGATTGCAGTGAAAAGGATGGAATGTGGAATGGTGGTTGAGAAAGGGCTGGATGAGTTCAAGTCTGAAATCGCAGTACTCACTAAAGTTCGACACAGGCATTTGGTTGCACTCCTAGGCTATTGCTTAGATGGAAATGAGAGGCTTCTGGTGTATGAATACATGCCTCAGGGGCCTCTTAGTAAACACCTATTTGACTGGCAAGAAGAAGGGTTAAGACCACTGGAGTGGAAGAGAAGGCTTTCCATTGCCTTGGATGTTGCTAGAGGTGTTGAATATCTTCATGCTTTGGCACAACAAATTTTTATCCATAGGGATCTGAAACCTTCAAATATCTTGCTTGGGGATGATATGCGTGCTAAAGTAGCAGACTTTGGATTGGTTCGGCTTGCACCAGATGGACAAGTCTCATTCGCAACTAGAATTGCTGGAACTTTTGGATATCTTGCACCAGAGTATGCAGTCACTGGACGAGTTACAACAAAGGTTGATGTATATAGCTACGGCGTGATTCTTATGGAGATGGTAACCGGAAAGAGAGCAATTGACAATAGCCAACCAGAAGAGAGTATCCACCTTGTTACATGGTTCCGAAGGATGCTGCTGAACAAAGACTCATTCAGAAAGCTCATTGACCCCACAATAGATGTTGACGAGGAAGCCTTAGATAGTTTGAAGACTGTTGCAGACTTGGCCAGCCACTGCTGCGCAAGAGAGCCGCATCAGCGTCCTGACATGGGTCATGTTGTGAATGTGATAGCACCGTTTGTTGAGATCTGGAAGAAGCCTGCAGTTGTAGATGCTGATGACATGTGTGGGATTGACTTAGACATGAGCTTGCCTCGAGCACTCAGTAAGTGGCAGGCTCTTGATGGAATGAGCACTCTGGATCAATCATCTTCTACATCAATGCTTAGTAGTGGAGATAATACACAGTCAAGCATTGCAACAATGCGACCTTCTGGATTTGCAGATTCGATTTGTGATGGAAGATGA	2787	0.4349	MGFRFSLVHLLHLVLLLFSLMFLPRACPQDAVVMNTLKKAITSSSGLKWSDPDVCNWNHVQCNSNKRVTAIQIGYLNLEGSLPKELVQLTELTRFECMQNGFTGPFPYMPKSLEILIIHDNNFSSIPFDFFSNMTNLQEVRIDYNDFPQWQVPSSLKDCVALQQFSAMRAGFVGGIPEFFGKDGPFPGLVFLGLCFNSFEGGLPASFSGSSIENLLVNGQMGNSKLNGSLSVLQNMTSLKQIWVHGNSFTGPIPDLSNHDQLFDVSLRDNQLTGVVPPSLTDLPALKVVNLTNNYLQGSPPKFKDGVRVDNDMDRGNNRFCTKVVGQPCSPLVNVLLSVVEPLGYPLKLAENWEGNDPCGKQWMGIVCAGGNISIINFQNMGLSGNISPGFAQLTSVTKLFLANNDLTGTIPSELTSMPLLKQLDVSNNKLYGQVPSFRADVVLKTGGNPDIGKDKPQGPPGSGGKDKKHGAGAIVGIAVGGVSLLGIGVLGVVIYGRKHKKRPAGKLQSPNAIVVHPRHSGDGNGLKISVAAASGSGGGTSTGGFSPATSVQTVEAGNMVISIQVLREVTNNFSEENILGRGGFGTVYKGELHDGTKIAVKRMECGMVVEKGLDEFKSEIAVLTKVRHRHLVALLGYCLDGNERLLVYEYMPQGPLSKHLFDWQEEGLRPLEWKRRLSIALDVARGVEYLHALAQQIFIHRDLKPSNILLGDDMRAKVADFGLVRLAPDGQVSFATRIAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMVTGKRAIDNSQPEESIHLVTWFRRMLLNKDSFRKLIDPTIDVDEEALDSLKTVADLASHCCAREPHQRPDMGHVVNVIAPFVEIWKKPAVVDADDMCGIDLDMSLPRALSKWQALDGMSTLDQSSSTSMLSSGDNTQSSIATMRPSGFADSICDGR*	929

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lja2g3327	928	Pfam	Leucine rich repeat N-terminal domain	344	368	IPR013210	-
	Lja2g3327	928	Pfam	Leucine rich repeat N-terminal domain	29	63	IPR013210	-
	Lja2g3327	928	ProSitePatterns	Protein kinases ATP-binding region signature.	580	602	IPR017441	GO:0005524
	Lja2g3327	928	MobiDBLite	consensus disorder prediction	895	928	-	-
	Lja2g3327	928	SMART	serkin_6	574	854	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja2g3327	928	PANTHER	OSJNBA0070M12.3 PROTEIN	10	925	-	-
	Lja2g3327	928	Gene3D	Ribonuclease Inhibitor	332	456	IPR032675	-
	Lja2g3327	928	MobiDBLite	consensus disorder prediction	446	469	-	-
	Lja2g3327	928	PANTHER	TRANSFERASE, PROTEIN KINASE RLK-PELLE-LRR-IX FAMILY-RELATED	10	925	-	-
	Lja2g3327	928	ProSiteProfiles	Protein kinase domain profile.	574	854	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lja2g3327	928	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	699	711	IPR008271	GO:0004672\|GO:0006468
	Lja2g3327	928	Gene3D	Ribonuclease Inhibitor	28	327	IPR032675	-
	Lja2g3327	928	Gene3D	Phosphorylase Kinase; domain 1	543	651	-	-
	Lja2g3327	928	CDD	STKc_IRAK	580	847	-	-
	Lja2g3327	928	Gene3D	Transferase(Phosphotransferase) domain 1	652	862	-	-
	Lja2g3327	928	MobiDBLite	consensus disorder prediction	895	917	-	-
	Lja2g3327	928	SUPERFAMILY	Protein kinase-like (PK-like)	555	857	IPR011009	-
	Lja2g3327	928	SUPERFAMILY	L domain-like	39	438	-	-
	Lja2g3327	928	Pfam	Protein kinase domain	575	848	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lja2g3327	Lja-Chr2	75448631	75452482	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lja2g3327	71	864	Receptor kinase-like Gene Family	AT5G65700	30.372	3.74e-79	276

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-IX	Lja2g3327		Pkinase	3.1e-48	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lja2g3327	2	75448631	75452482	Lja2g3327	2	75448631	75452482	ECH