Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3320 ATGCCATCCTTGATATTTACTTTAATTTTACATTTTACGTATGTGCAGACCGTAATGGACCATACGGATCAAAGAGTTGAAGCGATTTCCCACTCTACAGCTTCACCAAATCGGACTAATCATGTTTCAGATATAAGTACAGTCAAGGTTAGCAACATATCACTGATGACTTCCAAGAAGGATATTGAAGAATTCTTTTCATTTTCAGGTGATATTCAATATATTGAGATGCAAAGGGAATCTGATCGCACCCAAGTTGCTTATGTTACTTTTAAGAATTCACAGGGAGCAGAGACAGCAGTTCTCTTAACAGGTTCCAAGATAGCTGACCTATATGTCACAATCACACCTGTGGAGAAGTACCAGCTTCCCCCTGATGCTCTTCCCTCAAGTCCAACAAACCAAAGTGCTGCTGCCGTTAAGAAGGCTGAAGACGTAATAAGCACCATGCTAGCCAGGGGTTTCATTTTGGGAAAGGATGCAATCAACAAGACAAAATCCTTTGATGAACGCCATCATTGGACCTCAAATGCTTCTTCCACAGTTGCTTCCATTGACCGTAAAATGGGTATAAGTGATAAACTAAGTATTGGAACAGCCATTGTCAATGATAAGGTGAGAGAGGTGGATGGAAGATTTCAGATTTCTGATATGACAAAGTCCGCAATTGCTGTCGCTGAGCAAAAGGCGAGTAGTGCTGGTTCTGCTATCATGAGCAATCCTTACGTATCCACTGGAGCTTCATGGCTGTCAAGTGCCTTCACTGCTATTGCAAAGGCGGCAGAGGATGTCAGCACGATGACAAAGGAGAAGCTTGAACAAGCCGAGGTGGAAAAGAAGGATACCATTTACAATGAAAGGAAAGGGAGTGTTGATGAATATGCACAGATGCACTTAGATGAGTCTTCAGATTGGGGTCCTGCAGTTGTTCCTGTTAATTCGGACAACGACAGTAAGCTGTGA 963 0.4247 MPSLIFTLILHFTYVQTVMDHTDQRVEAISHSTASPNRTNHVSDISTVKVSNISLMTSKKDIEEFFSFSGDIQYIEMQRESDRTQVAYVTFKNSQGAETAVLLTGSKIADLYVTITPVEKYQLPPDALPSSPTNQSAAAVKKAEDVISTMLARGFILGKDAINKTKSFDERHHWTSNASSTVASIDRKMGISDKLSIGTAIVNDKVREVDGRFQISDMTKSAIAVAEQKASSAGSAIMSNPYVSTGASWLSSAFTAIAKAAEDVSTMTKEKLEQAEVEKKDTIYNERKGSVDEYAQMHLDESSDWGPAVVPVNSDNDSKL* 321
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3320 320 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 109 IPR000504 GO:0003723
Lja2g3320 320 Coils Coil 258 278 - -
Lja2g3320 320 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 120 IPR000504 GO:0003723
Lja2g3320 320 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 10 319 - -
Lja2g3320 320 SUPERFAMILY RNA-binding domain, RBD 36 122 IPR035979 GO:0003676
Lja2g3320 320 SMART rrm1_1 47 116 IPR000504 GO:0003723
Lja2g3320 320 Gene3D - 41 116 IPR012677 -
Lja2g3320 320 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 10 319 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lja2g3320 Lja-Chr2 75286883 75290099 Dispersed/Wgd
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3320 2 75286883 75290099 Lja2g3320 2 75286883 75290099 ECH