Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3317 ATGGTGTCTAGATCCTATTCAAACCTATTGGAGCTGGCTTCTGGTGAGGCCCCATCATTGGGGTTCATGGACAGGAGAATTCCAAGGATTATGACTGTGGCTGGATTGATATCTGAAGTCGATGATGACCAGAGTGAGTGCTCTGATCGGTCCTCTTCGTCAGCGGCGCACCGTGACCGACTAATAATGGTGGCAAATCAGCTACCCATAAGGGCTCAGAGGAACCCAGATGGTTATAACAGGAATTCATGGTCTTTTGAGTGGGATGAGAATGCACTTCTTCAATTGAAAGATGGGTTCGGTGATGATAATATTGAGGTTATCTATGTTGGATGCCTCAAGGAAGATGTGCACCCAAATGAACAAGAAGAGGTTTCACAGATTCTTCTTGAGAGCTTCAAGTGTGTCCCAACTTTTCTCCCACCTGAAATGTATACCAGGTTCTATCATGGCTTTTGCAAACAGCAATTGTGGCCACTGTTCCATTACATGTTGCCTCTTTCACCTGAACTTGGTGGCAGGTTTAACAGGACGCTGTGGCAAGCTTATGTCTCAGTTAATAAAATTTTTGCAGATAGAATCATGGAAGTTATCAACCCTGAAGATGATTATGTGTGGATACATGACTATCATCTAATGGTGTTGCCAACTTTCTTGAGGAAGAGATTTAACAGGGTGAAGCTCGGATTCTTCCTTCATAGCCCATTCCCTTCCTCAGAAATATATAAAACATTGCCTGTGAGGGAAGAGCTCTTGAGGGCCCTCCTCAATTCAGATTTGATTGGGTTCCATACTTTCGATTATGCACGGCATTTCCTCTCATGTTGCAGCCGGATGCTAGGTCTGACGTACGAATCGAAGCGAGGCTATATTGGGATTGAGTATTATGGCAGGACTGTTAGTATCAAGATTCTTCCTGTTGGGATACACATGGGTCAGCTTCAATCGGTTCTGAGGATGCCGGAGACTGAAAAGAAAGTTTGCGAGCTCATTAGACAGTTTTCTGATCAAGGAAAGACAATGTTGCTTGGGGTGGATGACATGGATATTTTCAAGGGAATAAGTTTGAAGCTTTTGGCCATGGAGCAGCTTCTGATTCAGCACCCTGAGTATCAGGGAAAGGTAGTGCTGGTTCAGATAGCGAATCCTGCGAGGGGAAGAGGGAAAGATGTGAAAGAAGTGCAAGAAGAAACGAAGGCCACTGTGAAACGGATTAATGAAACGTTCGGGATACCAGGGTATGTTCCTGTTATTCTGATTGAGGAGCCACTCAAGTTTTATGAAAAAGTTGCTTACTATGTTGCTGCTGAGTGTTGTTTAGTCACTGCAGTGAGGGATGGAATGAATCTGATACCATATGAGTATGTAATCAGTCGTCAAGGAAATGAAACATTGGATAAAGTTTTGGGGCTAGCTTCCTCCCCTAAGAAGAAAAGCATGTTGGTTGTGTCTGAGTTCATTGGATGTTCCCCATCTTTAAGTGGAGCAATCAGAGTGAACCCGTGGAACATCGATGCGGTAGCAGAAGCGATGGACTATGCACTGGAAATGGCTGATGCAGAGAAGCAGTTGAGGCATGAAAAGCATTATAGATATGTTAGTACTCATGATGTCGGGTACTGGGCTCGGAGCTTCTTACAGGATTTGGAAAGGGCTTGCAGTGATCATGGACGAAGACGGTGGTGGGGAATCGGGTTCGGATTAAGTTTTAGAGTTGTAGCACTTGATCCAAACTTTAGGAAGCTCTCAATGGAACACATAGTTTCAGCATACAAGCGCACAACAAATAGGATGATCCTTCTAGACTATGATGGCACACTAATGCCTCAGGCTTCTATGGATAAGAGCCCAACTAGTCAATCCATTGAGTTTCTTAATAGTATGTGTAGAGATAACAATAACATGGTGTTTCTTGTTAGTGCTAGAAGCCGAAAGGCGCTTTCTGCATGGTTTTCTCCTTGTGAGAATCTGGGACTTGCGGCTGAGCATGGTTACTTTATAAGAATGGACCGAGACGCCGAATGGGAAACCTGTGTTGCTGCAACAGATTGTAGTTGGAAACAAATTGCACAACCTGTAATGAAGCTTTATACTGAAACAACTGATGGGTCTACCATTGAAGATAAGGAGACTGCACTTGTTTGGTGGTATGAGGATGCGGATCCCGATTTTGGGTCGTGCCAAGCTAAGGAACTTCTTGATCATCTTGAGAGTGTGCTGGCAAATGAACCAGTAACCGTCAAAAGTGGCCAGAGTTATGTGGAGGTTAAACCACAGGGTGTGAGCAAGGGACTAGTGGCCAAACGCCAACTTTCTGCCATGCAAGAAAAGGGAATGTCACCTGATTTTGTTCTGTGCATAGGCGATGACAGGTCTGATGAAGACATGTTTGAGGTAATCACCAGTTCAATGAACGGTCCGATCGCACCGAGGGCTGAAGTTTTCGCGTGTACTGTTTGCCGAAAACCCAGCAAGGCTAAATACTACTTGGATGATACAGCAGAAATAGTGAGATTGATTCAGGGTTTAGCCTGTGTTTCAGACCATTCAGTTTTATGCTCCTTAGTATCGTATGCTGCTCCTTAA 2586 0.4435 MVSRSYSNLLELASGEAPSLGFMDRRIPRIMTVAGLISEVDDDQSECSDRSSSSAAHRDRLIMVANQLPIRAQRNPDGYNRNSWSFEWDENALLQLKDGFGDDNIEVIYVGCLKEDVHPNEQEEVSQILLESFKCVPTFLPPEMYTRFYHGFCKQQLWPLFHYMLPLSPELGGRFNRTLWQAYVSVNKIFADRIMEVINPEDDYVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYKTLPVREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLTYESKRGYIGIEYYGRTVSIKILPVGIHMGQLQSVLRMPETEKKVCELIRQFSDQGKTMLLGVDDMDIFKGISLKLLAMEQLLIQHPEYQGKVVLVQIANPARGRGKDVKEVQEETKATVKRINETFGIPGYVPVILIEEPLKFYEKVAYYVAAECCLVTAVRDGMNLIPYEYVISRQGNETLDKVLGLASSPKKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVAEAMDYALEMADAEKQLRHEKHYRYVSTHDVGYWARSFLQDLERACSDHGRRRWWGIGFGLSFRVVALDPNFRKLSMEHIVSAYKRTTNRMILLDYDGTLMPQASMDKSPTSQSIEFLNSMCRDNNNMVFLVSARSRKALSAWFSPCENLGLAAEHGYFIRMDRDAEWETCVAATDCSWKQIAQPVMKLYTETTDGSTIEDKETALVWWYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQSYVEVKPQGVSKGLVAKRQLSAMQEKGMSPDFVLCIGDDRSDEDMFEVITSSMNGPIAPRAEVFACTVCRKPSKAKYYLDDTAEIVRLIQGLACVSDHSVLCSLVSYAAP* 862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3317 861 TIGRFAM T6PP: trehalose-phosphatase 596 843 IPR003337 GO:0003824|GO:0005992
Lja2g3317 861 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 850 IPR001830 GO:0003824|GO:0005992
Lja2g3317 861 Pfam Glycosyltransferase family 20 60 550 IPR001830 GO:0003824|GO:0005992
Lja2g3317 861 CDD GT20_TPS 60 550 IPR001830 GO:0003824|GO:0005992
Lja2g3317 861 Gene3D Glycogen Phosphorylase B; 52 315 - -
Lja2g3317 861 Gene3D Glycogen Phosphorylase B; 316 534 - -
Lja2g3317 861 SUPERFAMILY HAD-like 597 844 IPR036412 -
Lja2g3317 861 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 553 - -
Lja2g3317 861 Gene3D - 596 712 IPR023214 -
Lja2g3317 861 Gene3D - 726 852 IPR023214 -
Lja2g3317 861 Pfam Trehalose-phosphatase 600 833 IPR003337 GO:0003824|GO:0005992
Lja2g3317 861 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 850 - -
Lja2g3317 861 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 598 800 IPR006379 -
Lja2g3317 861 CDD HAD_TPP 599 838 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3317 Lja-Chr2 75197647 75201871 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3317 1 849 Trehalose Biosynthesis Gene Families AT1G68020 79.582 0.0 1441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3317 2 75197647 75201871 Lja2g3317 2 75197647 75201871 ECH