Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3315 ATGCGTAAAACAATCGAGTTGTATGGTTTCCCTTGTCATGTAACTGTGTCTAGTGTAAGGACATTTGTAGAGAATTATACTGGTAAAGGCACTGTGTATGCTATTAAGGTAAGACATGGAAAAGGGCGTGTTCCAAGAGCATTTGCTATTATTCAATTCACCTCTGTGGAGTCTTCTGCAGACATGATGTCCAGAGCTAACAGTTTATGGTATGGGAACTCCTATCTAAAAGTTCGCGAAATGGAAAGAGATATTGTGCCAAAGCCAAGAACCTTTTTGCATAGTTTGAATAATGTGAAACTGTCTTTTGGCTGTCAAATATCAAAAGGAAGATTCTCAGCTTTATGGAATACCGTGAATGTTGAGGTAAATTTTGGGTCTGGAATGAGAAAGTGGCATTTCATTCTGTCCGATAACAATGTCAGATACAAACTTGAGCTTTCATATGAAAACATTTGGAAGATAGAGCTGCATCAACCACGGGGTGGAATTGCAAAGTATCTCCTGATTCAGTTACTTGGCGCTCCTCGGATTTACAAGCTTAACAATCCTACTTCAGGAAATGTATATGAAGATCCTTCAATGAACTATTGCATGGATACCCCTGATGAGCAATGGATCAGAGCAGTTGATTTTACTCCTTTCAGTCGTATCGGGCAGTCTTCTGCTTTGTGTCTGGAGCTTCCTGATGGCCAATGTGTTCCAAATTTCAGGGAAAACTTTGCTTATTATGAAGAAAGTGCGAGGCGATACACTGTAGAGACAGGACTTCCTTTTTCTCTCAATCTTAGGCTTGTCCCCATTGTTGCTCCTCCTCAAGGCATTGAAATACCATATGATATCTTGTTTAAAGTTAATTCATTGGTTCAACATGGGTGTCTTGCAGGTCCTTTACTTGATAATGACTTCTATCATTTGGTTGATCCATGTAGAATGGACCTTCAGTTTATTGAATATGCTTTAGAAAAATTGTACCATTCAAAGGATTTTTGTTATGAACCCACAAAGTGGCTGACTGAACAGTACATAACGTACCTTAGCTCAAAGAGGCCTCCTCGGTCACCTACAATATCCTTGGATACAGGGTTGGTATATATTCGCAGGGCTCAGGTCACACCTTGCAAAGTATACTTTTGTGGTCCAGAGATTAATGTCTCAAATCGTGTTCTACGCGAGTTCCGTGAACATATCGATAACTTTCTACGTGTTTCATTTGTTGATGAGGAGTTGGATAAACTTTATTCAACAGATTTATCTTCACGCACTGATAGGCAGAAAACAGAGATATATGAAAGAATTCTTTCCATCCTTAGAAATGGCATAGTAATTGGTGATAAGAAGTTTGAATTTCTTGCATTCTCATCTAGTCAGCTTCGGGAAAATTCTCTCTGGATGTTTGCTCCTACAACAACTGGATGTACTGCTGCTTACATAAGGAAATGGATGGGAGATTTTCGCCGGATAAGAAATGTGGCTAAGTATGCTGCTAGGCTGGGGCAATCTTTTGGTTCATCTACTGAAACTCTAAGCGTCAGAAGGGATGAAGTTGAGATTATTCCGGATGTGAAGGTTAATGATGGTAGAACCGAATATGTCTTCTCTGATGGAATTGGGAAAATATCTCATGAATTTGCCAGGAGTGTGGCTAGAAAATGTGGTCATAATTCCACTCCATCAGCCTTTCAGATTCGGTATGGCGGATACAAAGGAGTTGTTGCTGTAGACCCAACATCACATGCAAAGCTATCACTGAGGAAGAGCATGCACAAGTACGATTCGGATAACACAAAGTTGGATGTTTTGGCATGTAGTAAGTTTCAGCCTTGTTATCTGAATCGGCAGTTGATTACTCTCTTATCCACTCTTGGTGTCAGGGACAATGTTTTTGAGAAAAAACAAAGGGATGCTGTTAATCAACTGGACACTATGCTAACAGATTCATTAAAGGCACAGGAGGCTTTAGACTTGATGTCTAGTGGGGAGATCACCAATATTCTGAAGGAGATGCTCATTTGTGGCTACAAGCCTAATGTTGAACCATTTCTCTCAATGATGATGCAGACATTTAGGGCATCAAAACTGCTGGAATTGCGAACAAGAACTAGGATCTTTATTCCAAGTGGAAGAGCAATGATGGGATGTCTAGATGAAACTGGAACCCTTGAATATGGTCAAGTGTTTGTTCAATTTTCCAACAATAGGCTCGGGAATCAGAGTCTTTATGTTATTACGGGTAAGGTAGTAGTGGCGAAAAACCCCTGCTTGCACCCGGGTGATGTGCGTGTTTTGAAGGCTATGAATGTGCCAGCTTTGCACCACATGGTAGATTGTGTTGTTTTCCCTAAAAAAGGAAGCAGACCTCATCCAAATGAATGTTCAGGAAGTGATTTGGATGGAGACATCTACTTCGTTTGTTGGGACTCTGATTTAATTCCAAGTAGGACAGAACAACCAATGGACTATACTGCTGCCCCAAATATGGAATTGGATCATGATGTAATGATTGAGGAGGTTGAGGAGTATTTTACAAATTACATAGTCAATGACTGTCTGGGGATAATTGCCAATGCACACACTGTCTTTGCAGATAGGGAACCTTTGAAAGCAATGGCTGAACCATGTATTAAGCTTTCACAGCTCTTCTCAATAGCAGTTGACTTTCCAAAAACCGGTGTCCCAGCTGTTATACCTCAAGAACTTTATTGCAAAGAATATCCTGATTTCATGGAGAAGCCTGACAAACCCACCTACGTGTCGCCTAACGTAATAGGAAAGCTTTTTAGGGAAGTGCAAGGGATTTCATCAAGTGCTGGCTCTATTACATCCTTCACTAAGGAAGTGGCTATAAAGTCATTTGACCCCGACATGGAAGTCGATGGCTTCATGGACTATGTTGATGATGCTTACTATCACAAGGGGAATTATGACTATAGGTTGGGAAATCTGATGGACTACTATGGGATCAAAACTGAAGCTGAAATCCTCAGTGGGAATATCATGAAAATGTCAAAGTCATTCACTAAAAGAAGGGATGCGGAAGCAATTACTATGGCTGTAAGGTCCCTTAGGAAAGAGGCGCGCACCTGGTTCAATGATAGCAGTGGTGGTGGTGGTGATGATGCGTACGCAAAAGCTTCGGCTTGGTATTATGTTACTTACCATCACAGTTACTGGGGTTGCTACGATGAAGGTATGAATAGGGACCATTATCTAAGCTTCCCATGGTGTGTGTACTCTCTCCTTGTCCAAATCAAGAAGGAGAAGATAGCCAGGAACAGAAGAAATGCTGACCAATCCTTGGAGTACAGTTTCAGTCATAGGTTGCATTTGAATTAA 3336 0.4092 MRKTIELYGFPCHVTVSSVRTFVENYTGKGTVYAIKVRHGKGRVPRAFAIIQFTSVESSADMMSRANSLWYGNSYLKVREMERDIVPKPRTFLHSLNNVKLSFGCQISKGRFSALWNTVNVEVNFGSGMRKWHFILSDNNVRYKLELSYENIWKIELHQPRGGIAKYLLIQLLGAPRIYKLNNPTSGNVYEDPSMNYCMDTPDEQWIRAVDFTPFSRIGQSSALCLELPDGQCVPNFRENFAYYEESARRYTVETGLPFSLNLRLVPIVAPPQGIEIPYDILFKVNSLVQHGCLAGPLLDNDFYHLVDPCRMDLQFIEYALEKLYHSKDFCYEPTKWLTEQYITYLSSKRPPRSPTISLDTGLVYIRRAQVTPCKVYFCGPEINVSNRVLREFREHIDNFLRVSFVDEELDKLYSTDLSSRTDRQKTEIYERILSILRNGIVIGDKKFEFLAFSSSQLRENSLWMFAPTTTGCTAAYIRKWMGDFRRIRNVAKYAARLGQSFGSSTETLSVRRDEVEIIPDVKVNDGRTEYVFSDGIGKISHEFARSVARKCGHNSTPSAFQIRYGGYKGVVAVDPTSHAKLSLRKSMHKYDSDNTKLDVLACSKFQPCYLNRQLITLLSTLGVRDNVFEKKQRDAVNQLDTMLTDSLKAQEALDLMSSGEITNILKEMLICGYKPNVEPFLSMMMQTFRASKLLELRTRTRIFIPSGRAMMGCLDETGTLEYGQVFVQFSNNRLGNQSLYVITGKVVVAKNPCLHPGDVRVLKAMNVPALHHMVDCVVFPKKGSRPHPNECSGSDLDGDIYFVCWDSDLIPSRTEQPMDYTAAPNMELDHDVMIEEVEEYFTNYIVNDCLGIIANAHTVFADREPLKAMAEPCIKLSQLFSIAVDFPKTGVPAVIPQELYCKEYPDFMEKPDKPTYVSPNVIGKLFREVQGISSSAGSITSFTKEVAIKSFDPDMEVDGFMDYVDDAYYHKGNYDYRLGNLMDYYGIKTEAEILSGNIMKMSKSFTKRRDAEAITMAVRSLRKEARTWFNDSSGGGGDDAYAKASAWYYVTYHHSYWGCYDEGMNRDHYLSFPWCVYSLLVQIKKEKIARNRRNADQSLEYSFSHRLHLN* 1112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3315 1111 Pfam RNA dependent RNA polymerase 371 930 IPR007855 GO:0003968
Lja2g3315 1111 PANTHER RNA-DEPENDENT RNA POLYMERASE 3 1104 - -
Lja2g3315 1111 CDD RRM_SF 5 79 - -
Lja2g3315 1111 PANTHER RNA-DEPENDENT RNA POLYMERASE 3 1104 IPR007855 GO:0003968
Lja2g3315 1111 SUPERFAMILY RNA-binding domain, RBD 3 83 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3315 Lja-Chr2 75179096 75186408 Dispersed/Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3315 2 75179096 75186408 Lja2g3315 2 75179096 75186408 ECH