Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3313 ATGTCTAGGACACTTAAAATTTTTGGATTCCCATCTCATGTTTCGCCTGAAGAGGTTAAGAAATTTTTGGAGCAACATACAGGACTCCAAACTGTTGATGCTGTTGAGTTTGGGCAGCAAAAAGAGGATGACCCTTGGACACATGTTAATGTTCAGTTCACAAACAGAGAAAGTGTGGAAACTATCTTGCTATTGGTTTCTCAACACCTATCTTACAGTGTCTTCACTCTAAATGCTAAAGAAATACAACCTGATATTTTGGCAAAGCCAAGGAGCTTTGCTTATAGCATTGATGATGTAGTAGTGCACTTTGGATGCCAAACATCCAAGGAAAAACTTGGTGTACTATGGGAACATCCAAAGGTTTCTGTTCAATTTGGGGCCAGACTAAGAAAGATGTATATATTTTTTCATTATTTGTCCACAGATTATAAGCTGCAGATTTCTTCAGAGAGTATATCACGAATTGAGCTACATCAATCTCATGGTTTCACCAATAAGCTTCTCCTTTTTCAGCTACGAGGTGCTCCTCAAATCTATGAAAAAGTTAATTCAAGAAGCAAATATTTTAAGGAGCCTTATAACAACCATTGGTTTCGAGGAGTAGATTTCACTGCATCATACTGTATTGGACAATCTTCTGCTGTATGTTTTAAGCTTCCAAAAACTACTCAGCTTCCAAATTTTCGTCACCACTATCATAACTATTATGAAGTTGACAACATCTTAACTCCTGAGAGGCACCTTGGTTTCTCATCAAACTTGAACTTTGTCCCCATGGTGATTCCACCAGAAGGCTTCAACTTGCCATACAAAATTCTTTTCAAAATCAACTCACTGGTTCAGCATGGTTTGCTTCCTTTCCTAGCAATTGACACCAACCTTTTTCACATGGTTGATCCAAAAAGAATAAAGGTTGAGTATATAGAAAGTGCCCTGCATAAACTTTATCAGATGAAAGAATGTTGCTATGAGCCTGTACAATGGTTGGAGAAACAATATCAAAGATACTCACAAAATAGTCAACTTCCAGTGTCCTGTGCAATTTCGTTAGATGATGGGTTGGTCTATGTGCATAGAGTACAAGTAACTCCATCCAGAATATATTTCTGTGGTCCAGAAGTGAATCTTTCCAACCGCGTCTTACGCAACTATCCTCAAGACACTGATAATTTTCTTCGTGTTTCGTTTGTTGATGAAGACATGGATAAACTTCATTCAGCAGATTTGATGTTTACAGGTGTGAAAAGAGAAACCAAACTACATCAAAGGGTGCTGACTACACTTAAAAATGGCATAACAATTGGTAATAAGAAGTTTGAGTTTCTTGCCTTCTCGTCAAGTCAATTACGCGATAGCTCAGTGTGGATGTTTGCATCAAGAGATGGACTCACTGCATCTGACATAAGGAAGTGGATGGGAGATTTTCATGAAATAAGAAATGTGGCCAAATATGCAGCTAGGCTTGGACAATCATTCAGCTCTTCCAGGGAAACAGTGAGTGTTGGAAGGCATGAAATTGAAATGATTCCTGATATAGAGTTTAGAAGAGGTGAAGTCAACTATTGTTTTTCTGATGGAATTGGGAAGATATCTGCTGAATTGGCTCAAATAGTGGCTAGGAAATGTGGCTTCAGGGATCACGTTCCATCTGCATTTCAAATCAGATATGGTGGGTTCAAAGGTGTTGTTGCTATTGATCCAAGTTCAGCAATTAAACTTTCTTTAAGAAAGAGCATGTGCAAGTACAAGTCAGAAAACACAAAATTGGATGTTTTGGCATGGAGCAAACAAAAATCTTGTTTCCTTAATCGTCAAATTATCATCCTTTTGTCCACGCTCGGGGTCAAGGATCGAGTCTTTAGAAGGAAGCAAAGGGAGGTTGTTAATCAAATAAAAATGATATCAAGAAAGCCATTCAAGGCAATAGACATGATGTCCCATGGAGATATTACAAACATGTTGAGGGAAATGCTTATCTATGGATTTCATCCCACAAAGGAACCTTTTCTTTCCATGATGTTGCAAACACTATGTGCATCTAAATTACAAGAATTGCAGCTTAAAACAAGGATATTCGTTAAGAAAGGAAGAGCAATGTTAGGATGCTTAGATGAAACTAGGACATTAAATTATGGACAGGTATTTGTGCAGATATCACTCCCAAGAAATAATGTTATGTCCTCTCTTTCTTCTAAAGGCAATGGAGCAAACAAAAGTAAATATGTTGTTAAGGGAAAGGTAATTGTAGCTAAAAATCCATGTCTACATCCAGGAGATGTGAGGATTTTGAGAGCAGTAGATTTACCTTCCCTGCATCATATGGTAGACTGTGTTGTTTTTCCACAGAAAGGGAGAAGACCACATCCTAATGAATGTTCAGGAAGTGACTTGGATGGAGATATCTATTTTGTATGTTGGGACCCCGGTCTTATTCCTCCACATCAAGAAAATCCCATGGATCATGAACCATCTCAAGTTATGAATGTAAATCTTGATCATGATGTTACATTACAGGTATTAATTTATAAAATTGCTTAG 2541 0.3766 MSRTLKIFGFPSHVSPEEVKKFLEQHTGLQTVDAVEFGQQKEDDPWTHVNVQFTNRESVETILLLVSQHLSYSVFTLNAKEIQPDILAKPRSFAYSIDDVVVHFGCQTSKEKLGVLWEHPKVSVQFGARLRKMYIFFHYLSTDYKLQISSESISRIELHQSHGFTNKLLLFQLRGAPQIYEKVNSRSKYFKEPYNNHWFRGVDFTASYCIGQSSAVCFKLPKTTQLPNFRHHYHNYYEVDNILTPERHLGFSSNLNFVPMVIPPEGFNLPYKILFKINSLVQHGLLPFLAIDTNLFHMVDPKRIKVEYIESALHKLYQMKECCYEPVQWLEKQYQRYSQNSQLPVSCAISLDDGLVYVHRVQVTPSRIYFCGPEVNLSNRVLRNYPQDTDNFLRVSFVDEDMDKLHSADLMFTGVKRETKLHQRVLTTLKNGITIGNKKFEFLAFSSSQLRDSSVWMFASRDGLTASDIRKWMGDFHEIRNVAKYAARLGQSFSSSRETVSVGRHEIEMIPDIEFRRGEVNYCFSDGIGKISAELAQIVARKCGFRDHVPSAFQIRYGGFKGVVAIDPSSAIKLSLRKSMCKYKSENTKLDVLAWSKQKSCFLNRQIIILLSTLGVKDRVFRRKQREVVNQIKMISRKPFKAIDMMSHGDITNMLREMLIYGFHPTKEPFLSMMLQTLCASKLQELQLKTRIFVKKGRAMLGCLDETRTLNYGQVFVQISLPRNNVMSSLSSKGNGANKSKYVVKGKVIVAKNPCLHPGDVRILRAVDLPSLHHMVDCVVFPQKGRRPHPNECSGSDLDGDIYFVCWDPGLIPPHQENPMDHEPSQVMNVNLDHDVTLQVLIYKIA* 847
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3313 846 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 839 IPR007855 GO:0003968
Lja2g3313 846 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 839 - -
Lja2g3313 846 Pfam RNA dependent RNA polymerase 363 839 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3313 Lja-Chr2 75133973 75145574 Proximal
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3313 2 75133973 75145574 Lja2g3313 2 75133973 75145574 ECH