Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja2g3304 ATGGCTACACCGTTGCAGAAACGAGTGCACTCCGGCACCAGCTCCGGCGGCTCATATGAGGTTACTTCCGCCCCGGAGTTCCCGGTGGGTCACAGAGTTCTCGTCGTCGACGATGATACCACCACCTTGAAGATTATTGAGAAAATGTCTATTAGTTGCAATTATCGCGTTACCGCATGCTCTGATGCCACTGTTGCTTTGAATCTTCTGCGAGAGAGGAAAGATGATTTTGATGTGGTACTGAGTGATGTTCACATGCCAGACATGGATGGATATAAACTTCTTGAACATGTTGGGTTGGAGATGGATCTTCCTGTTATTATGATGTCTGTTGATGGTAGAACATGTGCTGTCATGAAGGGAATTAGACATGGGGCTTGTGATTATTTAATTAAGCTAGTACGTCTGGAAGAACTGAGGAATATATGGCAGCATGTCGTTAGGAAAATATACAATGAAAATAAAGAACATGCAAATTCTGGTGATGCTAAACATACTTCTTCTATTGAATTGGAGATTGATGACCCATCATCTAAGAAGCCCCGTGTAGTGTGGTCAGTAGATCTGCATGAAAAGTTTGTTAGTGCTGTGATTCAACTTGGGCTTGACAGGGCTGTGCCAAAGAGAATTCTAGAGTTGATGAATGACCCTGACTTAACAAGGGAAAATGTTGCAAGCCATTTGCAGAAATTTAGAATTTATTTGAGGCGATTAAGTGAAGTGGCACAGCAACAGATTGGAATGCTAAATACAGTTCCTGGGACTATAGAATCCAAGTTGAGTGCATCTGGAAGATTTGACATACAAGCTTTGGCTGCTTCTGGCCATGTTCCCCCTGAAACACTTACAGCCATTCAAGCTGAGTTTTTAGGTCACCCCATAACTAACATAATACCTACGGTGGGCCAGATTACCCTTCTCGAAGCATCAAGACAGGGTCCAATACATTCTCATGTTCATCATGGTTTGGCACATGGTCAGCCTCTTGAAAAATGCCCTTCCAACATTGCCAAGAATTTCCCTCAGCCCATCGTTACTTTTGATGGCACATCTTCAAGATATGTTGCATCGCAATCATCTAATACAATTAATTATGTGGGACCAAATAGTAGCGTTGGAAGGTTGGGCGATCAGAATAATGACATGCTGGTGAATATATTGCGGCACCAACAACAGCAGCAGCACCCGCAACAGCCCTCACCTCTGATACAGGATCAAAGTCGATCAATCAATGTTCAACCATCTCGTGTGGTAGTTCACTCTCAAGCTTCTGACACTTTGAAGGTGGTGAATAATCTTGCTACTGTCAACCAGGGTTGCAGTTTTGGCAGGAATGCCATAATTGGTTATGGTTCATTGTCACAAAAATCAAATAAATCATTGAGTACATCTCAATTTACTAGTGGTGATGCCATAATTAATTATGGTTCTTGTTCAATAGGCTCCACCCATAGCAATATTCCGCAGCATCAAAACTCAACTTTCACATTTGGTGCTGCGAAACCAATCCCTGAACTTCTGCCTGTTACTGATAGACAAGTTCCCTATGGTGTTAAATCTGGTGCTTCACTTGATCAAGCATGTCCTAGCAGTCTTGGATTTGTTGGCAGAGGTACCTGCATTCCAAGTAGGTTTATGGAAAATGAAATTGAATCTTCTGCAGGTGATTTTAGTCAAATGAAAGTACCCGTAGATAGCAATGATTTGTTTGAACTTTATAATATTATGAATATTAGTTGCAGTACTATTTGA 1752 0.4178 MATPLQKRVHSGTSSGGSYEVTSAPEFPVGHRVLVVDDDTTTLKIIEKMSISCNYRVTACSDATVALNLLRERKDDFDVVLSDVHMPDMDGYKLLEHVGLEMDLPVIMMSVDGRTCAVMKGIRHGACDYLIKLVRLEELRNIWQHVVRKIYNENKEHANSGDAKHTSSIELEIDDPSSKKPRVVWSVDLHEKFVSAVIQLGLDRAVPKRILELMNDPDLTRENVASHLQKFRIYLRRLSEVAQQQIGMLNTVPGTIESKLSASGRFDIQALAASGHVPPETLTAIQAEFLGHPITNIIPTVGQITLLEASRQGPIHSHVHHGLAHGQPLEKCPSNIAKNFPQPIVTFDGTSSRYVASQSSNTINYVGPNSSVGRLGDQNNDMLVNILRHQQQQQHPQQPSPLIQDQSRSINVQPSRVVVHSQASDTLKVVNNLATVNQGCSFGRNAIIGYGSLSQKSNKSLSTSQFTSGDAIINYGSCSIGSTHSNIPQHQNSTFTFGAAKPIPELLPVTDRQVPYGVKSGASLDQACPSSLGFVGRGTCIPSRFMENEIESSAGDFSQMKVPVDSNDLFELYNIMNISCSTI* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja2g3304 583 Pfam Response regulator receiver domain 33 142 IPR001789 GO:0000160
Lja2g3304 583 SUPERFAMILY Homeodomain-like 178 237 IPR009057 -
Lja2g3304 583 Gene3D - 177 239 - -
Lja2g3304 583 SUPERFAMILY CheY-like 31 157 IPR011006 -
Lja2g3304 583 Gene3D - 30 167 - -
Lja2g3304 583 MobiDBLite consensus disorder prediction 1 23 - -
Lja2g3304 583 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR14 28 432 - -
Lja2g3304 583 Pfam Myb-like DNA-binding domain 182 230 IPR001005 -
Lja2g3304 583 CDD REC_typeB_ARR-like 33 147 - -
Lja2g3304 583 ProSiteProfiles Response regulatory domain profile. 32 147 IPR001789 GO:0000160
Lja2g3304 583 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 180 233 IPR006447 GO:0003677
Lja2g3304 583 MobiDBLite consensus disorder prediction 1 21 - -
Lja2g3304 583 SMART REC_2 31 143 IPR001789 GO:0000160
Lja2g3304 583 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 432 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja2g3304 Lja-Chr2 74749268 74753114 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja2g3304 26 251 Response Regulator Gene Family AT2G25180 53.725 7.69e-82 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Lja2g3304 Response_reg 3.7e-19 CL0304
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja2g3304 2 74749268 74753114 Lja2g3304 2 74749268 74753114 ECH